Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00114 ATGAATGTGATTGCAACAAGAACAGCAAACAAGAAGAGGGGAGAGATTGAGATGAAAGAAGTTGAGCAGAGAAACAGGCGTCACGTGACCTTCTCCAAACGCAAACTAGGGTTATTCAACAAACTCACCGAGCTCTCTGTTCTCTGCCAAGTAGAGGCAGCTGTGATCATCACCTCGCAAAACGGGAAGTTCTATTCCTGCGGCTACCCCGACCCTGACGCTGTCGTTCGCCGCTACCTCACTGGAGGGCCTCCGCTGCGGCGCAACCCTGCAGACAATAGGGGGCAACATGACTTGCTTGAGAAGCAAAGGCTGGAATATGAGGCTATTCAGAATCAGTTGAAAGAAGAGAAGAAGCGTCTGGAAGAAATACAAGGGACGCGAAATAACAATGGTTTCTTCTTTGCTGCCCCTTGGTGGAACCTTCCCGCTGAGGACATAGGTTTCGAGGATCTTCAACAGTTCAAGACTTCTTTGGAATGCTTGAAGTTTAACCTAATTGGGGCATTGCAAGAGAAGCAGATGAATTCGGTTCCATCAATGCAACCTTCTACGGTTCCCccaccaatgccatatactgtggttccaccaatgtcatctactatggttccaccaatTTCACAGTTTTTTAGTGCGCAGCGTTTCAGTAGAAATCAAGTTCAAGGTGATGATTATCGGAGGAGTGGTGCTATAGCTAGTACTAGTTCGTCGACGTTTGCTTCAAGTGGTTTTGGAAGCCAGGAAAATTATAGGTATACTAATTAA 765 0.4327 MNVIATRTANKKRGEIEMKEVEQRNRRHVTFSKRKLGLFNKLTELSVLCQVEAAVIITSQNGKFYSCGYPDPDAVVRRYLTGGPPLRRNPADNRGQHDLLEKQRLEYEAIQNQLKEEKKRLEEIQGTRNNNGFFFAAPWWNLPAEDIGFEDLQQFKTSLECLKFNLIGALQEKQMNSVPSMQPSTVPPPMPYTVVPPMSSTMVPPISQFFSAQRFSRNQVQGDDYRRSGAIASTSSSTFASSGFGSQENYRYTN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00114 254 SUPERFAMILY SRF-like 12 81 IPR036879 GO:0003677|GO:0046983
Gma16g00114 254 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Gma16g00114 254 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Gma16g00114 254 Gene3D - 23 108 IPR036879 GO:0003677|GO:0046983
Gma16g00114 254 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Gma16g00114 254 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Gma16g00114 254 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Gma16g00114 254 PANTHER MADS BOX PROTEIN 9 185 - -
Gma16g00114 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 66 IPR002100 GO:0003677|GO:0046983
Gma16g00114 254 Coils Coil 97 127 - -
Gma16g00114 254 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 9 185 - -
Gma16g00114 254 MobiDBLite consensus disorder prediction 235 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00114 Gma-Chr16 1136751 1137515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00114 11 163 Type I MADS-box Gene Family AT5G60440 32.484 3.27e-21 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma16g00114 SRF-TF 1.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00114 - - gsj:114418701 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00419 07 3812423 3813377 Gma16g00114 16 1136751 1137515 GST