Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00101 ATGGCCGATGAAGGAAACAAAAGCAATAACTTCTATTCGATCTTGGGGTTGAAGAAGGAGTGCACTGAATTGGAGCTAAAGAATGCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCGACCGGGAATTCAGAGTTAGTGGAAGAAGCTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTATTCAGTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTGGGAGTCTACGACAGTGATGACGACGAGAACGGCATGGGGGACTTCTTGGACGAAATGCTAACAATGATGAGTCAGACCAAATCGAATGAAAACGGAGAGGAGAGCTTTGAGGAGTTGCAACAGTTGTTTGAAGACATGTTTGAAGCAGATATTGGATTGGACGGAGGCCCTTCTCTTGCTTCTTCTGATTGCTCAACTTCATCTGCTTACATGACTTATAGTGAAAGTTCTAGTTCAAATAAACACAATTCCTCTGAGATGAATTTCGGGAAGGCAGAGAATTCTTCTGTCTTTGATGCTGGTTACCAGAATTTCTGTTTTGGGACAGGTGAACCAACTCCAAGATATAAAGAAGAAAAAGGGGGGAATTCTAGGAGGAGGTAG 621 0.4235 MADEGNKSNNFYSILGLKKECTELELKNAYRKLAKKWHPDRCSATGNSELVEEAKKKFQEIREAYSVLSDANKRLMYDVGVYDSDDDENGMGDFLDEMLTMMSQTKSNENGEESFEELQQLFEDMFEADIGLDGGPSLASSDCSTSSAYMTYSESSSSNKHNSSEMNFGKAENSSVFDAGYQNFCFGTGEPTPRYKEEKGGNSRRR 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00101 206 Pfam DnaJ domain 10 78 IPR001623 -
Gma16g00101 206 SUPERFAMILY Chaperone J-domain 8 93 IPR036869 -
Gma16g00101 206 MobiDBLite consensus disorder prediction 185 206 - -
Gma16g00101 206 Gene3D DnaJ domain 7 134 IPR036869 -
Gma16g00101 206 PRINTS DnaJ domain signature 12 30 IPR001623 -
Gma16g00101 206 PRINTS DnaJ domain signature 30 45 IPR001623 -
Gma16g00101 206 PRINTS DnaJ domain signature 53 73 IPR001623 -
Gma16g00101 206 PRINTS DnaJ domain signature 73 92 IPR001623 -
Gma16g00101 206 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Gma16g00101 206 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 206 - -
Gma16g00101 206 Coils Coil 51 71 - -
Gma16g00101 206 MobiDBLite consensus disorder prediction 192 206 - -
Gma16g00101 206 CDD DnaJ 10 70 IPR001623 -
Gma16g00101 206 PANTHER PUTATIVE, EXPRESSED-RELATED 1 206 - -
Gma16g00101 206 SMART dnaj_3 9 73 IPR001623 -
Gma16g00101 206 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00101 Gma-Chr16 1004923 1008510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00101 12 78 C2H2 Transcription Factor Family AT1G74250 45.588 1.81e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00101 - - gmx:100791192 359.377