Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00092 ATGGCGACCAAAAATTTACCTATGGAGCTGCACGAAATCACCACCGAGTTCGAAGGATCCGACCCGGACTCCGAATGGGACGATTCGAAAGAAGACCCTGATTTCGACTTGCTCGAAGAAACTCATAGCAAGTTCTCAATCCTCTCACTTAAGCACAAGGCAAAAGCGCGCGTTGTCGAAGATAAGGGTCTAGGCGAGGAGGTGAATGCTTCTGCTCATGATGGAGAGAACTTTCAGAAAGTTCAAAAATTAATCCAAGTGGGACCGTTAGAGAAATTGAAAGTGGATGAATGCAAGTTGTATCTGAGGAAGAATGGTCTGAGGCTAACTGGAAACAAGGATACACTTATACAACGCATAAAGGAGCATTTAGATATTTTAAATGGAGGGGAGAAGAAGTATCCACCTTCAAGCTTTGTGTTGAATTGTAAAGGTGATGCATGCACTGGTGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATGTTTAACATAGCATCCAGGAGTGCAAGTGGTCCACCTTGTGGCAAAAGGATTGTCGCAGGCCGCATAGTGAAAGAAAGTTATGGTGCTGCTAAACAACAGCATACGTTTACGATTGAAGTACTCTGGAGCAAAGGAGAAAAGCCTCTCCCTCCCCTTTACCCCCTACTGATAAAGGGTCGAAACCTTTATAGGTTAAAGACTTTGAGACAGAAATGGGAGGATGAAGCAAAAAGGCAGAAAATATTGATGGAAAAACACTCAAGGGGATCTCTTGCTAGGGAAGATAGAGAAGCAAGGATGCAAGAAaaggaaaagaggaaaaaaattaaggaaaatagGGTCTCCAAAAAGGATTCAGCAAGGAACCAAAGTCAATCAAATTCACACATTACAAGGCCACAATATCAACCTCAAGAAACAAATGTACCCATTAATCCAGAAAAGCCAGAATTTCCATCTCGAAATTCAGGTTTATCTGCCAACATAAGGAAAGAAACATCCTCTATTGTACATAAACCAGCAGCTGTAACTGGACACCATGTTGATTCTAAAACTTTAGGAAGAACCTCATTTACTGACAATATGCATAATCAGCAAGCTTGGAGCACAGGTGACTGTAGGAATATTTCTGATATTGGTCACATGAGGAGGGGAGCTGATCATAGTGCATACTACAATTATGGTGACTCCCATTTCAGAGAAAAACCAACTGTTATTCTGAAATACCACCATCATTATCATCATAGGATGCCTTTGGCAAATGCAAACCACTCTCAACAGGTGCTACCAGATAGAGAAAGCTATGATAAGCAAAAGCAGGTGTGTAGACATTATGCCCGTGGGAGATGCTATTATGGGGACAACTGCAAATTCTTGCATGATTTGAGAGACAAAGGGAATGTGTGA 1392 0.408 MATKNLPMELHEITTEFEGSDPDSEWDDSKEDPDFDLLEETHSKFSILSLKHKAKARVVEDKGLGEEVNASAHDGENFQKVQKLIQVGPLEKLKVDECKLYLRKNGLRLTGNKDTLIQRIKEHLDILNGGEKKYPPSSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSASGPPCGKRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLKTLRQKWEDEAKRQKILMEKHSRGSLAREDREARMQEKEKRKKIKENRVSKKDSARNQSQSNSHITRPQYQPQETNVPINPEKPEFPSRNSGLSANIRKETSSIVHKPAAVTGHHVDSKTLGRTSFTDNMHNQQAWSTGDCRNISDIGHMRRGADHSAYYNYGDSHFREKPTVILKYHHHYHHRMPLANANHSQQVLPDRESYDKQKQVCRHYARGRCYYGDNCKFLHDLRDKGNV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00092 463 SMART c3hfinal6 432 457 IPR000571 GO:0046872
Gma16g00092 463 Coils Coil 253 275 - -
Gma16g00092 463 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 4 459 - -
Gma16g00092 463 SUPERFAMILY CCCH zinc finger 430 456 IPR036855 GO:0046872
Gma16g00092 463 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 4 459 IPR045124 GO:0003723|GO:0045892
Gma16g00092 463 SMART sap_9 90 124 IPR003034 -
Gma16g00092 463 MobiDBLite consensus disorder prediction 245 320 - -
Gma16g00092 463 ProSiteProfiles Zinc finger C3H1-type profile. 431 458 IPR000571 GO:0046872
Gma16g00092 463 Pfam CCCH-type zinc finger 436 456 IPR041367 -
Gma16g00092 463 MobiDBLite consensus disorder prediction 245 280 - -
Gma16g00092 463 Pfam SAP domain 90 124 IPR003034 -
Gma16g00092 463 SUPERFAMILY SAP domain 80 125 IPR036361 -
Gma16g00092 463 ProSiteProfiles SAP motif profile. 90 124 IPR003034 -
Gma16g00092 463 Gene3D - 420 462 - -
Gma16g00092 463 MobiDBLite consensus disorder prediction 1 32 - -
Gma16g00092 463 Gene3D SAP domain 71 136 IPR036361 -
Gma16g00092 463 MobiDBLite consensus disorder prediction 281 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00092 Gma-Chr16 946392 949552 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma16g00092 SAP 9e-10 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00092 - - gmx:100815642 936.021