Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00087 ATGTCAAGCTTCCCCAACACGGTGGCGGAAGGCCGCAGGTCCAGCAAGGCACCGGAAAAATCCACTTTTTCTCAGACTTGCAGCCTCTTGAGCCAGTTCTTGAAGGAGAAACGTGCTTCTGCTGATTCCACCTTTCGAATTGGTGGGAAAATGGAACCCATAGCGAGTACCAAGGGTTTGTTAGGAAGCCTGCAAAACTCTGATGGGGCTTTGAAACTAAGCGCTTCTGCCATGGAATTTCTTCCCCAGCTTGTGGAAAACCCCTGCATTAAGAAGTCTAGATCACAGGGACCTGAAACTCCCCAATTGACAATATTCTATGCTGGAAAAATGTTGGTGTTTGATGCCTTTTCGCCGGAGAAGGCGACGGAGGTCATGGAGATGGCCACCAAGTTGGCCTCGGACAACTCCGGCACCGAAGAAAGTCCCCCTAGTGCTCCGGTTGCCACTGAAAAATTGGCTGTGTCCAAAGTGCCCCAAACAAACACATTCTCAGAAACCCCTAAGGCAGGAAACCAAGGGGTTGGTTCAGATATGAGGTACCCAAGGAGAGCTTCACTTCTAAAATTTCTTGAGAAAAGAAAAGAAAGGGTCAATGCTAGGGGGCCATACCAAATTAACAACCACAAGCCAGAAGGAAGCAGTTCGGGGGGTGAACCTGAAGATTCCCAACAGTTTGACCTTAACTTGTAG 693 0.4892 MSSFPNTVAEGRRSSKAPEKSTFSQTCSLLSQFLKEKRASADSTFRIGGKMEPIASTKGLLGSLQNSDGALKLSASAMEFLPQLVENPCIKKSRSQGPETPQLTIFYAGKMLVFDAFSPEKATEVMEMATKLASDNSGTEESPPSAPVATEKLAVSKVPQTNTFSETPKAGNQGVGSDMRYPRRASLLKFLEKRKERVNARGPYQINNHKPEGSSSGGEPEDSQQFDLNL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00087 230 MobiDBLite consensus disorder prediction 185 200 - -
Gma16g00087 230 MobiDBLite consensus disorder prediction 1 24 - -
Gma16g00087 230 MobiDBLite consensus disorder prediction 157 230 - -
Gma16g00087 230 SMART tify_2 96 131 IPR010399 -
Gma16g00087 230 Pfam tify domain 98 129 IPR010399 -
Gma16g00087 230 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 8 226 IPR040390 -
Gma16g00087 230 Pfam Jas motif 183 205 IPR018467 -
Gma16g00087 230 ProSiteProfiles Tify domain profile. 96 131 IPR010399 -
Gma16g00087 230 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 8 226 - -
Gma16g00087 230 MobiDBLite consensus disorder prediction 208 230 - -
Gma16g00087 230 MobiDBLite consensus disorder prediction 157 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00087 Gma-Chr16 905142 908196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00087 19 206 Tify Gene Family AT1G19180 32.258 1.58e-20 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gma16g00087 tify 2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00087 K13464 - gmx:100815478 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00389 07 3519647 3527605 Gma16g00087 16 905142 908196 GST