Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00063 ATGATGAGTGCAAGTGCAGGTGCAAGAAATAGGTCTCCGTTCACACAAACTCAGTGGCAAGAGCTTGAGCAACAAGCTCTTGTTTTTAAGTACATGGTTACAGGAACACCTATCCCACCAGATCTCATCTACTCTATTAAAAGAAGTCTAGACACTTCAATTTCTTCAAGGCTCTTCCCACATCATCCAAttgggtggggatgttttgaaatgggatttggcagaaaagtagacccagagccagggaggtgcagaagaacagatggcaagaaatggagatgttcaaaggaggcatatccagactcaaagtactgtgaaagacacatgcacagaggcagaaaccgttcaagaaagcctgtggaagTTTCTTCAGCAACAAGCACCGCCACAAACACCTCCCAAACAATCCCATCATCTTATACCAGAAACCTTTCCTTGACCAATAACAGTAACCCCAACATAACACCACCACCACCACCCTCTTCTTTCCCTTTCTCTCATTTGCCCTCTTCTATGCCTATTGATCAGTCCCAACCCTTTTCCCAATCCTACCAAAACTCTTCTCTCAATCCCTTCTTCTACTCCCAATCAACCTCCTCTAGACCCCCAGATGCTGATTTTCCACCCCAAGATGCCACCACCCACCACCTATTCATGGACTCTGCTGGCTCTTATTCTCATGATGAAAAGAATTATAGGCATGTTCATGGAATAAGGGAAGATGTGGATGAGAGAGCTTTCTTCCCAGAAGCATCAGGATCAGCTAGGAGCTATACAGACTCGTACCAACAACTATCAATGAGCTCCTACAAGTCCTATTCAAACTCCAACTTTCAGAACATTAATAATGATGCCACCACCAACCCAAGACAGCAAGAGCAGCAACTACAACAACAACAACACTGTTTTGTTTTAGGGACAGACTTCAAATCAACAAGGCCAAGCAAAGAGAAAGAAGCTGAGACAACAACAGGTCAGAGACCCCTTCACCGTTTCTTTGGGGAGTGGCCACCAAAGAACACAACAACAGATTCCTGGCTAGATCTTGCTTCCAACTCCAGAATCCAAACCGATGAATGA 1080 0.3722 MMSASAGARNRSPFTQTQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDTSISSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSATSTATNTSQTIPSSYTRNLSLTNNSNPNITPPPPPSSFPFSHLPSSMPIDQSQPFSQSYQNSSLNPFFYSQSTSSRPPDADFPPQDATTHHLFMDSAGSYSHDEKNYRHVHGIREDVDERAFFPEASGSARSYTDSYQQLSMSSYKSYSNSNFQNINNDATTNPRQQEQQLQQQQHCFVLGTDFKSTRPSKEKEAETTTGQRPLHRFFGEWPPKNTTTDSWLDLASNSRIQTDE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00063 359 PANTHER - 6 358 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gma16g00063 359 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma16g00063 359 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma16g00063 359 MobiDBLite consensus disorder prediction 311 325 - -
Gma16g00063 359 Pfam WRC 79 121 IPR014977 -
Gma16g00063 359 MobiDBLite consensus disorder prediction 152 166 - -
Gma16g00063 359 MobiDBLite consensus disorder prediction 108 208 - -
Gma16g00063 359 MobiDBLite consensus disorder prediction 338 359 - -
Gma16g00063 359 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Gma16g00063 359 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma16g00063 359 PANTHER GROWTH-REGULATING FACTOR-LIKE PROTEIN 6 358 - -
Gma16g00063 359 MobiDBLite consensus disorder prediction 310 359 - -
Gma16g00063 359 MobiDBLite consensus disorder prediction 167 204 - -
Gma16g00063 359 MobiDBLite consensus disorder prediction 119 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00063 Gma-Chr16 638915 640608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00063 1 357 GRF Transcription Factor Family AT3G13960 40.049 9.58e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gma16g00063 WRC 2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00063 - - gmx:100814760 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00360 07 3230081 3231602 Gma16g00063 16 638915 640608 GST