Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00061 ATGAGTAACTGGTTGGGGTTCTCTCTCACTCCACACTTGAGGATTGATGAAGAATTTGAGAGAGAAAACCAAGAGCGTGGAGGAGGGTACCATCATCCTTCTCCTTCTTGTCACCCTCACTTGTCTGTTATGCCCCTTCGCTCTGATGGCTCTCTCTGTGTTGCTGACTCCTTTAGTCACTCTGCTGCATCTCAAGAATGGAGATATGATAGTGCAATAGGTGGAGGGAATTCCAATGAAGAAGGTCCAAAGCTTGAAGACTTTTTGGGTTGCTACTCAAACTCCCCCGCTAAGGTCTTTTGCCAAGACTCTCAGCCTGACCAAAACCAAAGCCAGAACAATGTTTCCAAAATCAATGTTAATGTGGCACCAAGCTTTTGCACCAACAATTCAGAGATTGAAACTGGGGATAATCTCACAAATCCTTCTTCCTTGCTCCATTCTTTCCATGCATATAATGATAACTCACATGCTCTTATCCCCACCAATGGCATGTACAAGTCCTGGTTGGCACAAACCCAGTTTTCTTCTGATGGAAAACCTTCAAATGAGGCTAATGGGTGCAATTTCCAATCTTTGTCCCTCACTATGAGCCCCAGTGTGCAAAATGGGGTGGGTGCAATTTCCTCTGTTCAAGTGAATGAGGATAGTAGGAAACGGGTCATGGCGAAATCTCATGCTAGAGAACCAGTTCCTCGCAAATCTATTGACACTTTTGGGCAAAGAACATCTCAATATCGTGGTGTTACAAGGCATAGATGGACTGGAAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGAAAGGAAGGGCAAACAAGGAAAGGAAGGCAAGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAGGCTTACGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCCCGAATAGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTAGCACACAAGAAGAAGCTGCTGAAGCATATGATATAGCAGCAATCAAGTTCAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATCTGCTCAAGCTCCACTCTTATTGCAGGAGATCTTGCAAAACGGTCTCCTAAAGAATCACCAGCTCCGGTTCCTGCCTCTGACTTCAATTCGTGCGGTTCATCGCCGATGCCGCTGGTGTCTCAGCCACCTCCTTTGGCTATAACTGATGGTGAACATTCTGATGAGTTGTCCAACATGATGTGGAATGCCAACAACAGTGATGAGCAAGCACAGAATGAGAGTGGTGGTGCTGAATTCAACAACAATGTAACTGAATCATCATCATCACAACAGGTTTCACCAAGCAGCAACAAGGATGCTTTGAACCCTCAAAGCCCCAATGAGTTTGGAGTCAGTGGAGCAGATTATGGACATGGCTACTTCACCCTTGATGGACCAAAATATGATGATGGGAACAATGAAAATGACCACATGAGCACCAACAGGCTTGGAAATTTGGGATTGGTTAATCAAGTTCCCATGTTTGCTTTGTGGAATGAATGA 1716 0.4446 MSNWLGFSLTPHLRIDEEFERENQERGGGYHHPSPSCHPHLSVMPLRSDGSLCVADSFSHSAASQEWRYDSAIGGGNSNEEGPKLEDFLGCYSNSPAKVFCQDSQPDQNQSQNNVSKINVNVAPSFCTNNSEIETGDNLTNPSSLLHSFHAYNDNSHALIPTNGMYKSWLAQTQFSSDGKPSNEANGCNFQSLSLTMSPSVQNGVGAISSVQVNEDSRKRVMAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAAKAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKESPAPVPASDFNSCGSSPMPLVSQPPPLAITDGEHSDELSNMMWNANNSDEQAQNESGGAEFNNNVTESSSSQQVSPSSNKDALNPQSPNEFGVSGADYGHGYFTLDGPKYDDGNNENDHMSTNRLGNLGLVNQVPMFALWNE 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00061 571 MobiDBLite consensus disorder prediction 423 462 - -
Gma16g00061 571 PRINTS Ethylene responsive element binding protein signature 246 257 IPR001471 GO:0003700|GO:0006355
Gma16g00061 571 PRINTS Ethylene responsive element binding protein signature 384 404 IPR001471 GO:0003700|GO:0006355
Gma16g00061 571 ProSiteProfiles AP2/ERF domain profile. 344 402 IPR001471 GO:0003700|GO:0006355
Gma16g00061 571 CDD AP2 244 310 IPR001471 GO:0003700|GO:0006355
Gma16g00061 571 MobiDBLite consensus disorder prediction 477 520 - -
Gma16g00061 571 Pfam AP2 domain 343 394 IPR001471 GO:0003700|GO:0006355
Gma16g00061 571 Pfam AP2 domain 245 300 IPR001471 GO:0003700|GO:0006355
Gma16g00061 571 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 35 503 - -
Gma16g00061 571 SUPERFAMILY DNA-binding domain 343 404 IPR016177 GO:0003677
Gma16g00061 571 SMART rav1_2 344 408 IPR001471 GO:0003700|GO:0006355
Gma16g00061 571 SMART rav1_2 245 314 IPR001471 GO:0003700|GO:0006355
Gma16g00061 571 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 35 503 - -
Gma16g00061 571 SUPERFAMILY DNA-binding domain 244 310 IPR016177 GO:0003677
Gma16g00061 571 CDD AP2 343 404 IPR001471 GO:0003700|GO:0006355
Gma16g00061 571 MobiDBLite consensus disorder prediction 477 524 - -
Gma16g00061 571 Gene3D AP2/ERF domain 244 310 IPR036955 GO:0003700|GO:0006355
Gma16g00061 571 Gene3D AP2/ERF domain 344 404 IPR036955 GO:0003700|GO:0006355
Gma16g00061 571 ProSiteProfiles AP2/ERF domain profile. 245 308 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00061 Gma-Chr16 607667 611008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00061 1 432 AP2-EREBP Transcription Factor Family AT1G72570 50.756 4.46e-136 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Gma16g00061 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00061 K09285 - gmx:100809762 1124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00358 07 3201914 3205247 Gma16g00061 16 607667 611008 GST