Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00043 ATGTCGCGAAACCTCGTGCCGCCGGAAGTCTTCGACAAGCTACACGACGCGGTCAAAGATAACGGCGCCCAAATCCACCTCTGTTGCGACCCTTCCCGAAACGGCCCCAACGATTACCACATTATTTCTTCCAGCAAACATGAAAAGTTCGATGACCTCAAATCCAAGGGCTGTAAATTGCTCGGTCCTATATGTGTTCTTTCATGTGCCAAAGGAGGAAGGCCTCTTCCTAAACAAGGCTTTACTTGTTGCCTTGCCATGGACGGAGTCAAAGTACTTGCATCTGGCTTTGACACGGATGAGAAGGTTAAGATAGAAGAGTTAGTGGCTGAAATGGGAGGAGTTCTACACACTAAAGCATCATTGGATTTGAACTTTGTCGTTGTGAAAAATGTTTTAGCTGCGAAGTACAAGTGGGCTTTGAATATATTGAAGAAACCAATAGTCACTTATGAATGGTTAAAACAATGCTCAGATGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTAAAGATTTGTGTTACTGGAATCCCAGCAGATAACCGTAAGGAGATGGAGAAGCTTATTTTACAAAATGGTGGAAAATACTCCGCAGAATTGACAAAGAAGTGCACACATTTGATTTCTGAGGCTCCTGAAGGTGACAAATATAAGGTGGCAAAACGATGGGGCCACATTCATATTGTGACAAGGAAATGGTTTGATCAATCTATTGCTCGAAAAGCATGTCTGAATGAGGAGTTGTTCGCTGTTCAGCATGGATCTGTATCTTCGCATAAAGTAACTAGGGACTTAACAATGCAACATAGCCAAGAAAAGGATTTCGGGAAATTGCACTCTGCGGCATCCTCAGGTGCTACAGATTCAAATGTGCAAGTTTTTTCTTGTGCTGAGTTTATGGATAGAGATCTCGAAGCTACACAGTCAGAACACATGTCTTCAGTTTCAAATGTTCCTTTATTTGCTAAGGAGGCAGATTCTGAACCTCTTCCATTGCAGACCTGCAGTGAATTGAACTTTGATGGTGCTGTTGCTAATGATTCTGAATCTGATGATAATGACCTGTACTTGTCAGAGTGCAGAATATTACTAGTTGGTTTTGAAGCATGTGAAATGCGGAAACTAGTTAATATGGTGCGTAAAGGTGGTGGCTCCCGGTATATGTCTTTTAATGACAAATTGACACACATAGTAATTGGGAATCCTACTGAAATGGAAAAGAAGGATGTGAGGAGTCTTGCTGCTTTAGGTGTAATTTATGTTGTTAAAACTGCATGGCTTGAAGATTGTGACCGTGAAAAGAAACAAGTCCCTGTTCTTAGGAGACACATTGCATATGATCTACTTTATCCAAAAGCAAAAGGAGCAGTAACAGGCAGTATGTCTATGGATCACGCTAAAATCTCCAGCTTTCATCAAAGATTGCATCAGGTGGACTTTGAAATTGTAAAGCCAGAATCTTTGGAGAAAAGAAAAGAAGAGAAAAAAGATATGGGTATAAATGGTCACTCTTTCAGTGAAGCAATAGGCAGAACGATGCTGCAAAATCAACTTCCTGATAATAAATTGAGCTCACAAAGGATGACCCAACATAACTCCAGTGTTCAATACACGAAGTCAGCAAATGTTTTTAGAGGGAAACTATTTTGTTTCTCAAATTTATATCCTGAAGAAAAGAGAGGTGAGGTTGTTCAATGGATAACTCAAGGGGGAGGAGAGATAATAAGTGGGCAAACAAAACAGAGTACGTACTATACTATTGAGTGTCACGGTGTAACACCCACGTTGACACGTGATTCCAAGAGTTTGTATATTTCTAGTCATTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGACAGTCACATTCTTTATTCTCCACTTCCCTGCCGTGTTCCCTTGCCTGGGTTTGAAAGCTTCCGGTTTTGCTTTTCACAATATGATGAGAAAGACAGAAATCTCCTAAGAAACTTGTGCTTTCATCTTGGAGCTAAATATGGGGAGAAGTTGACTAAGAAGGTTACCCATTTGTTGTGTAAATTCACCAATGGGCCCAAGTATGAGGCTGCTTGTAAATGGGGGATTCAATCGGTTACATCTGAATGGATATTTGAATGTGTCAAGCAGAATGGAGTTGTGGCCATTGATCAGTTTTTACCAAAAGAAGTCACTGCTCAAGACCGAGATGCAGGAATTTGCACTGTGAGTCAATTTCCTACCCAGGCTGTTCAAATGATAAGTGACATGCCCTCCCAGTTGTCTAGTCAATCACAAACTTTGAGAGGCACGACAAATAAAAATGTCAGTTGTGGAGTTGATAATCATGAGACCAGTTTTAAGATACCAAGTAATTATAGCAAAAAGGCAAGGCTTGTGGAGGAACCTTGCCTATCCAATAAGAAGCCTTCAGCTTCAAATTCAGGTATTCATGCTGATGACAAGAATTTTTCCAAAGACAATATGCTTATAGATGCCGGGGAGGCTTTTCATGCTGTTCCAGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGactagtaagATGCATGATCAGAGGTCCCCAGCACAGACTGGGTGTGAGAGAAGTATTTACCCATCTGATCGCTCAGTCCTTAGTGAAGATAATTCCAATCCTCATACTGTCTTTGGATTATCTAAACACTGGTTAAACAGAAGTGGAAGAAAAGATGATAATGGGGAGGCTTCTGAAGACAGAAGAGCAGGAATATATGATGGTTTTAGTGAAACACAGACAGAATCTCAGGTTGTTGGTTATGAAGAAGATTTATCAGGAAGGCAAAGTCCGATGGCAAATGCTTATAGAGTCCGAACTCGAAGTAGCTTGCAGTGA 2883 0.4107 MSRNLVPPEVFDKLHDAVKDNGAQIHLCCDPSRNGPNDYHIISSSKHEKFDDLKSKGCKLLGPICVLSCAKGGRPLPKQGFTCCLAMDGVKVLASGFDTDEKVKIEELVAEMGGVLHTKASLDLNFVVVKNVLAAKYKWALNILKKPIVTYEWLKQCSDEHRVVPQESYKVLPFSGLKICVTGIPADNRKEMEKLILQNGGKYSAELTKKCTHLISEAPEGDKYKVAKRWGHIHIVTRKWFDQSIARKACLNEELFAVQHGSVSSHKVTRDLTMQHSQEKDFGKLHSAASSGATDSNVQVFSCAEFMDRDLEATQSEHMSSVSNVPLFAKEADSEPLPLQTCSELNFDGAVANDSESDDNDLYLSECRILLVGFEACEMRKLVNMVRKGGGSRYMSFNDKLTHIVIGNPTEMEKKDVRSLAALGVIYVVKTAWLEDCDREKKQVPVLRRHIAYDLLYPKAKGAVTGSMSMDHAKISSFHQRLHQVDFEIVKPESLEKRKEEKKDMGINGHSFSEAIGRTMLQNQLPDNKLSSQRMTQHNSSVQYTKSANVFRGKLFCFSNLYPEEKRGEVVQWITQGGGEIISGQTKQSTYYTIECHGVTPTLTRDSKSLYISSHWIRSCLEAGSLLDVDSHILYSPLPCRVPLPGFESFRFCFSQYDEKDRNLLRNLCFHLGAKYGEKLTKKVTHLLCKFTNGPKYEAACKWGIQSVTSEWIFECVKQNGVVAIDQFLPKEVTAQDRDAGICTVSQFPTQAVQMISDMPSQLSSQSQTLRGTTNKNVSCGVDNHETSFKIPSNYSKKARLVEEPCLSNKKPSASNSGIHADDKNFSKDNMLIDAGEAFHAVPDVAAAIEDLLEQTSKMHDQRSPAQTGCERSIYPSDRSVLSEDNSNPHTVFGLSKHWLNRSGRKDDNGEASEDRRAGIYDGFSETQTESQVVGYEEDLSGRQSPMANAYRVRTRSSLQ 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00043 960 CDD BRCT_TopBP1_rpt2_like 645 720 - -
Gma16g00043 960 Gene3D BRCT domain 642 735 IPR036420 -
Gma16g00043 960 ProSiteProfiles BRCT domain profile. 359 451 IPR001357 -
Gma16g00043 960 SUPERFAMILY BRCT domain 549 636 IPR036420 -
Gma16g00043 960 ProSiteProfiles BRCT domain profile. 169 258 IPR001357 -
Gma16g00043 960 ProSiteProfiles BRCT domain profile. 87 171 IPR001357 -
Gma16g00043 960 Gene3D BRCT domain 543 640 IPR036420 -
Gma16g00043 960 CDD BRCT 90 157 - -
Gma16g00043 960 SUPERFAMILY BRCT domain 46 170 IPR036420 -
Gma16g00043 960 MobiDBLite consensus disorder prediction 900 960 - -
Gma16g00043 960 MobiDBLite consensus disorder prediction 900 921 - -
Gma16g00043 960 Gene3D BRCT domain 22 81 IPR036420 -
Gma16g00043 960 Pfam BRCT domain, a BRCA1 C-terminus domain 548 631 IPR001357 -
Gma16g00043 960 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 1 944 - -
Gma16g00043 960 SUPERFAMILY BRCT domain 643 731 IPR036420 -
Gma16g00043 960 CDD BRCT_TopBP1_rpt2_like 173 248 - -
Gma16g00043 960 Gene3D BRCT domain 173 260 IPR036420 -
Gma16g00043 960 SMART BRCT_7 548 624 IPR001357 -
Gma16g00043 960 SMART BRCT_7 644 720 IPR001357 -
Gma16g00043 960 SMART BRCT_7 171 248 IPR001357 -
Gma16g00043 960 SMART BRCT_7 84 161 IPR001357 -
Gma16g00043 960 SMART BRCT_7 361 441 IPR001357 -
Gma16g00043 960 Gene3D BRCT domain 349 448 IPR036420 -
Gma16g00043 960 Pfam twin BRCT domain 651 712 IPR001357 -
Gma16g00043 960 Pfam twin BRCT domain 177 240 IPR001357 -
Gma16g00043 960 Gene3D BRCT domain 85 172 IPR036420 -
Gma16g00043 960 Pfam BRCA1 C Terminus (BRCT) domain 88 157 IPR001357 -
Gma16g00043 960 SUPERFAMILY BRCT domain 173 258 IPR036420 -
Gma16g00043 960 ProSiteProfiles BRCT domain profile. 647 730 IPR001357 -
Gma16g00043 960 ProSiteProfiles BRCT domain profile. 546 634 IPR001357 -
Gma16g00043 960 SUPERFAMILY BRCT domain 359 445 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00043 1 959 Core DNA Replication Machinery Family AT1G77320 49.457 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00043 K10728 - gmx:100804966 1835.46