Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00042 ATGAAGAACTTATGTGAGAAAGACTCTGGTCCTACCCATTTAACATATTATGCTCTTGGACGCACATCATGGGGAACTTCCTCTGAATCTGATGTGCAACAATCATCCATGTCCAAAAGTTTGAGCTTGAAAATAAGTGTTCTTCCGCAACAATGCCATAAGACCAAGCTGTTGAATTTTCAGTATCAAGATCGAGATTCATCTTCAACTCAATCATCCGGCCAGTCTTATCCAGAAGTTGGTTCAGCACAATCAGGTCAAATTTCAGTGCAGTGTAGCAATTGTTCTGCTTGTTCAACACTTAACACAACTGGGGGAAAGAGTGTGGAAGGTGTCATCAGCTCAACTGTGGGGATTCAGGATTATACCTTCCCTCTTTCACAACTGTGCTACAACCAATCACTTGCTCATACTGCATTCCACTTTGCCGAGCCGTGCTTTATTGGCCTAGTAGCTGCTCCATATGCGCCACAGCCTAATATTAATGATGCTCAGCTAGTAGGAATGAGTCCTGCTCGAATTCCTCTGCCACCTGATCTTATTGAGGGGCCTATGTATGTGAATGCAAAGCAGTACCATGCTATTCTGAGACGCAGGCAGTATCGTGCAAAACTTGAAGCACAGAACAAACTCATCAAAGAACGGAAACCATATCTTCACGAGTCCCGCCATCTACATGCACTGAAGAGAGCTAGAGGTTCCGGTGGACGCTTTTTGAATGCCAAAAAGCTCACTTCAGCGAACCATGGTGATTCTATAACAACATGTTCTGATGTCTTCCAGCAACATGAGTCAGACTTTAGGTTATGTGGTTACCCTTCTCGTATTGGAAGAAGCGTGCAGGGTTACTCGGTGGAAATCAACATCATCTATCAGTCCTTATGTGACAAACTTTTTTGGCACACTAGCAAGTGTTCCATAGGGAAGTCATCCTTGGCTCATTTACATTATTATGTCTGA 960 0.4354 MKNLCEKDSGPTHLTYYALGRTSWGTSSESDVQQSSMSKSLSLKISVLPQQCHKTKLLNFQYQDRDSSSTQSSGQSYPEVGSAQSGQISVQCSNCSACSTLNTTGGKSVEGVISSTVGIQDYTFPLSQLCYNQSLAHTAFHFAEPCFIGLVAAPYAPQPNINDAQLVGMSPARIPLPPDLIEGPMYVNAKQYHAILRRRQYRAKLEAQNKLIKERKPYLHESRHLHALKRARGSGGRFLNAKKLTSANHGDSITTCSDVFQQHESDFRLCGYPSRIGRSVQGYSVEINIIYQSLCDKLFWHTSKCSIGKSSLAHLHYYV 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00042 319 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 18 263 IPR001289 GO:0003700|GO:0006355
Gma16g00042 319 SMART cbf3 180 241 IPR001289 GO:0003700|GO:0006355
Gma16g00042 319 PRINTS CCAAT-binding transcription factor subunit B signature 184 206 IPR001289 GO:0003700|GO:0006355
Gma16g00042 319 PRINTS CCAAT-binding transcription factor subunit B signature 215 238 IPR001289 GO:0003700|GO:0006355
Gma16g00042 319 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 18 263 - -
Gma16g00042 319 Gene3D - 181 242 - -
Gma16g00042 319 ProSiteProfiles NF-YA/HAP2 family profile. 181 241 IPR001289 GO:0003700|GO:0006355
Gma16g00042 319 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 184 238 IPR001289 GO:0003700|GO:0006355
Gma16g00042 319 ProSitePatterns NF-YA/HAP2 subunit signature. 186 206 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00042 Gma-Chr16 380315 382920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00042 23 244 CCAAT-HAP2 Transcription Factor Family AT1G17590 49.561 8.89e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gma16g00042 CBFB_NFYA 3.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00042 K08064 - gmx:100803903 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00337 07 2985646 2990206 Gma16g00042 16 380315 382920 GST
Gma15g00261 15 2256202 2259590 Gma16g00042 16 380315 382920 PCT
Gma16g00042 16 380315 382920 Gma15g00261 15 2256202 2259590 PCT