Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00041 ATGGACTCTCGCACGTATAATCCTCGCACCGTCGAAGAGGTTTTTAGGGATTTCAAGGGCCGAAGAGCTGGTCTCATCAAAGCCCTAACCACCGATGTTGAAGATTTCTACAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTGTATGGCTTTCCCAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTACCACCAGAGCTTCCTGAGCCCGTACTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGCTATCTTTAGTTGCTGTTCATAGTGATGCATGGTTGCTTGCTATTGCATTCTATTTTGGAGCCAGATTTGGGTTTGATAAAGCTGACAGGAAACGGCTTTTCAACATGATCAATGAACTGCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAAAAGCAAGTTAAGGAGAAGTCTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGGCACAGCGGGCTCCAGAATCTCAGAGTAGACAGTCAAAGCCATTGCAACCAAAAGATGAGGATGAAGAACTGGACGATCAAGATGATGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGCACTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGTAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCTTGCAGTAACAAGAGAGCTCGGCCCTGA 762 0.458 MDSRTYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKAQRAPESQSRQSKPLQPKDEDEELDDQDDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00041 253 MobiDBLite consensus disorder prediction 144 193 - -
Gma16g00041 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Gma16g00041 253 Pfam PHD-finger 200 249 IPR019787 -
Gma16g00041 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Gma16g00041 253 SMART PHD_3 199 247 IPR001965 -
Gma16g00041 253 CDD PHD_AL_plant 199 249 IPR044104 -
Gma16g00041 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Gma16g00041 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Gma16g00041 253 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 5 253 - -
Gma16g00041 253 Pfam Alfin 10 138 IPR021998 GO:0006355|GO:0042393
Gma16g00041 253 PANTHER CPG BINDING PROTEIN 5 253 IPR045104 GO:0006355|GO:0042393
Gma16g00041 253 MobiDBLite consensus disorder prediction 149 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00041 Gma-Chr16 372357 376547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00041 6 252 Alfin-like Transcription Factor Family AT3G42790 75.709 2.33e-126 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gma16g00041 Alfin 3.1e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00041 - - gmx:100170700 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00336 07 2972997 2982686 Gma16g00041 16 372357 376547 GST
Gma15g00260 15 2250244 2255179 Gma16g00041 16 372357 376547 PCT
Gma16g00041 16 372357 376547 Gma15g00260 15 2250244 2255179 PCT