Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00020 atGGCGTCTGCTAGCCTTGGAAGTGGTGGGGTGGGCAGTTCCAGGTCTGTTAATGGTGGCTTCAGGGGTTCTTCCAGTTCCGTCGATTGGCTTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGATAGAGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAGAATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAAGCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGGACAAGCGCTACAAGAATAGAGAGTTACAAATTATGCAAATGCTGGATCATCCAAATATTGTTGCCCTTAGGCATTGTTTCTATTCAACGACTGACAAAGAAGAAGTTTACTTGAATCTTGTACTTGAATATGTTCCTGAAACTGTGAATCGCATCGCCAGGAGCTATAGCAGGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAGTGTTGGTGAAAGGAGAACCTAATGTTTCTTACATCTGTTCAAGATACTACCGTGCTCCGGAACTTATATTTGGGGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAGGTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGGTTTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCATTGGAAGCTTGCATTCATCCATTTTTTGATGAATTGAGGGACCCAAACACCCGCCTTCCTAATGGTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGAACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATTCCAGAGCATGCGCGTAAACAGAACTTATTTATGGCTTTGCACACCTAG 1263 0.4339 MASASLGSGGVGSSRSVNGGFRGSSSSVDWLGREMLEMSLRDHEDDRDSEPDIIDGLGAETGHVIRTSVGGRNGQSKQNVSYISEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFYSTTDKEEVYLNLVLEYVPETVNRIARSYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELSGVPPDVINRLIPEHARKQNLFMALHT 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00020 420 SMART serkin_6 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00020 420 CDD STKc_GSK3 77 369 IPR039192 -
Gma16g00020 420 Gene3D Phosphorylase Kinase; domain 1 67 161 - -
Gma16g00020 420 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 1 417 - -
Gma16g00020 420 Pfam Protein kinase domain 84 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00020 420 ProSitePatterns Protein kinases ATP-binding region signature. 88 112 IPR017441 GO:0005524
Gma16g00020 420 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 417 - -
Gma16g00020 420 ProSiteProfiles Protein kinase domain profile. 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00020 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Gma16g00020 420 MobiDBLite consensus disorder prediction 1 24 - -
Gma16g00020 420 SUPERFAMILY Protein kinase-like (PK-like) 81 393 IPR011009 -
Gma16g00020 420 Gene3D Transferase(Phosphotransferase) domain 1 162 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00020 Gma-Chr16 127663 133454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00020 88 369 Core Cell Cycle Gene Families AT1G76540 35.862 3.49e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gma16g00020 Pkinase 2.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00020 K03083 - gmx:100820098 832.787