Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00012 ATGATTATGGAAAACCATGCCAACACCAAGCATTTGGGATTGGGAGGACTAACAGAGAATGATGCTACTACGGCTCGCCTCATATCCAATGCAAATGGAAATGGAGCGGAAGAAGCCTCCACCTCCTCTGATGAACATCAACATCAAGGGGACAAGCACCGCAACCTCCTAAGggctgattcctttgagaagttggataagattggccaaggaacttacagcagtgtttatcgagctcgccttgcagcaatacccagcatcaagtttaccgaagcaccgatcaagtgttacatgcaacagtttcttcacggtgttgagcattgtcacagtcgtggtgttatgcaccctgacatcaagggctcaaatcttctgcttgacagtaatggatatctgaagattggtgattttaggcttgcaactttgtttcagccatcaaacaggaagcctttaacaagtcgtgttgtaaccttgtggtaccgaccacctgaacttttacttggagctacagattatggagttactgtggatttgtggagtgtcggatgtattcttgcagagttgtttgtcgggaagcctataatgcctggacgaacagagGGACAGGGTCTTACAAATTGTGAACGAAGGACAGATGTTAGTATCCTTTTTGaatactggaagaagtcaaagctaccacatgcaacagtttttaaaccacagcaaccttacaaacgtgttgtttctcagacattcaaggatattccttcatctgcactgagcctcttggaggtccttcttgctgtagaaccggaagatcgaggaactgcttctttagcacttcagcatgagTTCTTCACAGCAATGCCACGTCCTTGTGATCCATCAACTTTGCCAAAGTACCCACCAATTAAGGAGTTTGATGCCAAACTTCGTGAAGAGGAAGCTAGAAGGTATTTCTTTTTCGAATCTTTTTATATCGGAGATTCTAATGTGATTTTGTCATATCTGATTTTTGCATTATCTGCAACAATAGCACATTGTTTTGGACACCCTTCTGGTGTACGAAGAGCAGCAAATAAAGGATATGAACATGAATCAGTTGGGAGAAATTTTAGAGAGTCCAAAGCTGTGCCAATACCTGATGCTAATGCTGAGTTTCAGGCAACTATGAGGAGACAAGGACAGTGTAATTCCAAGTGCACTATTGAGAAGTACAATCCTCAAGAGGATGGCGATTACGGCTTCCACCATGAACCTGAAAAGTCAAGAGCACTCAATGTATTATCTCATTCTGGCCAGTTAATGCATCCAAGTGTATATGTATCCTCACGCAATATGAATTTGAAAGAGGAAAATCTCACTTGCCCAGATCATGGCTTTAGATCAAGAAAATTTTCTAATTCAGTTGCAGTTCGAGGTGATTCACTGCTTGATATGAGTGGTGACTTTAGTGTGAATTCGCAGTGGCCAGAAGATCAATTTGGCATGAGATATAGCCATCAGGCTGATGGATTTCCTTGCAACGTGGTTAATGTGTGTGTGTACATGTATGGCTATGCTAACAAAAATGCTCGCATGCACCATTCTGGACCGTTGCTGGCTCCAGAGGATAATCGTGAAGAAATGCTTAAGGAACATGAAAGGCAAATCCAACAGGCTGTCCGCAAAGTTCGTTTGGGTAAGGACAAGACAAAAAATGCTGACAGTGGGAATGGCCTAACTGAATCGCTATTTCAGCATGTGAGAAATCGAGAGTAG 1737 0.2758 MIMENHANTKHLGLGGLTENDATTARLISNANGNGAEEASTSSDEHQHQGDKHRNLLRADSFEKLDKIGQGTYSSVYRARLAAIPSIKFTEAPIKCYMQQFLHGVEHCHSRGVMHPDIKGSNLLLDSNGYLKIGDFRLATLFQPSNRKPLTSRVVTLWYRPPELLLGATDYGVTVDLWSVGCILAELFVGKPIMPGRTEGQGLTNCERRTDVSILFEYWKKSKLPHATVFKPQQPYKRVVSQTFKDIPSSALSLLEVLLAVEPEDRGTASLALQHEFFTAMPRPCDPSTLPKYPPIKEFDAKLREEEARRYFFFESFYIGDSNVILSYLIFALSATIAHCFGHPSGVRRAANKGYEHESVGRNFRESKAVPIPDANAEFQATMRRQGQCNSKCTIEKYNPQEDGDYGFHHEPEKSRALNVLSHSGQLMHPSVYVSSRNMNLKEENLTCPDHGFRSRKFSNSVAVRGDSLLDMSGDFSVNSQWPEDQFGMRYSHQADGFPCNVVNVCVYMYGYANKNARMHHSGPLLAPEDNREEMLKEHERQIQQAVRKVRLGKDKTKNADSGNGLTESLFQHVRNRE 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00012 578 PANTHER CELL DIVISION PROTEIN KINASE 348 554 - -
Gma16g00012 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 113 125 IPR008271 GO:0004672|GO:0006468
Gma16g00012 578 SMART serkin_6 62 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00012 578 PANTHER KINASE CDK9, PUTATIVE-RELATED 348 554 - -
Gma16g00012 578 PANTHER CELL DIVISION PROTEIN KINASE 79 310 - -
Gma16g00012 578 PANTHER CELL DIVISION PROTEIN KINASE 58 81 - -
Gma16g00012 578 Coils Coil 529 556 - -
Gma16g00012 578 MobiDBLite consensus disorder prediction 551 578 - -
Gma16g00012 578 SUPERFAMILY Protein kinase-like (PK-like) 57 286 IPR011009 -
Gma16g00012 578 MobiDBLite consensus disorder prediction 33 52 - -
Gma16g00012 578 Gene3D Transferase(Phosphotransferase) domain 1 80 315 - -
Gma16g00012 578 Pfam Protein kinase domain 87 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00012 578 ProSitePatterns Protein kinases ATP-binding region signature. 68 95 IPR017441 GO:0005524
Gma16g00012 578 PANTHER KINASE CDK9, PUTATIVE-RELATED 79 310 - -
Gma16g00012 578 PANTHER KINASE CDK9, PUTATIVE-RELATED 58 81 - -
Gma16g00012 578 ProSiteProfiles Protein kinase domain profile. 1 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00012 Gma-Chr16 88443 92961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00012 81 309 Core Cell Cycle Gene Families AT5G64960 45.852 9.74e-61 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma16g00012 Pkinase 5.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00012 - - gmx:100805055 709.523