Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00010 ATGGGTGCAATACGGCAACAACCCAGTGAATGGGTGAAAGGTAAACTTGTTGGTTGTGGATCTTTTGGCACTGTCCATTTGGCAATGAACAAATACACGGGTGGGCTTTTTGTTGTGAAATCACCACATTCCGGGGTTGGACGGCAGAGTTTGGACAAAGAGGTAAAAATCCTAAAAAGTTTAAATTCATCACCGTATATTGTCAAATGTTTGGGGACAGAGGAGGAGGAGCAAGGCAAACTGAATATTTTTATGGAGTACATGGCTGGGGGGAATCTGGCAGACATGGCGCACAAGTTTGGTGGGTCATTAGATGAAGAGGTGGTTCGGGTGTACACAAGGGAAATTCTTCATGGGTTAAAGCATCTCCACCAACATGGAATTGTGCATTGCGACCTAAAGTGCAAGAACGTGCTTTTGAGCTCATCTGGCAACATCAAGTTGGCAGATTTTGGAAGTGCAAAAAGGGTAAAGGAGGCAAATTGTTGGCAGTCTATTGGTGGGACTCCTCTCTGGATGGCTCCTGAAGTATTGAGGAACGAGTCTCTGGATTTTGCTGCGGATATATGGTCCTTGGGATGTACTGTTATTGAGATGGCTACTGGCACCCCTCCTTGGGCTCATCAGGTTTCAAATCCTACAACTGCTGTGCTCATGATTGCCCATGGTCATGGGATACCTCACTTTCCTCCCCATTTCTCTAAGGAGGGTTTGGATTTCTTGACCAGGTGCTTCGAGAGACATCCCAATAAGAGGCCTACTGTTCAGGACTTACTCACCCATCCATTTATTGTTTCTACAAAACAATATGCTTCTTCCCCGACAAGTGTCTTAGAGGTTCAAAATTTCAAAGATTCAGATGATGAATTAGAAACTTGTTCAGATCAGGGGAATCATTTCTCAATCACAAACACTACATTTGCATTTCATGATGATGACCTTAAAGGAATACCAATATGTAAACCCGAAGACATCTCATCAGGGAATTGGATTACTGTTAGATCAGGCTGA 1011 0.4382 MGAIRQQPSEWVKGKLVGCGSFGTVHLAMNKYTGGLFVVKSPHSGVGRQSLDKEVKILKSLNSSPYIVKCLGTEEEEQGKLNIFMEYMAGGNLADMAHKFGGSLDEEVVRVYTREILHGLKHLHQHGIVHCDLKCKNVLLSSSGNIKLADFGSAKRVKEANCWQSIGGTPLWMAPEVLRNESLDFAADIWSLGCTVIEMATGTPPWAHQVSNPTTAVLMIAHGHGIPHFPPHFSKEGLDFLTRCFERHPNKRPTVQDLLTHPFIVSTKQYASSPTSVLEVQNFKDSDDELETCSDQGNHFSITNTTFAFHDDDLKGIPICKPEDISSGNWITVRSG 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00010 336 SMART serkin_6 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00010 336 Pfam Protein kinase domain 13 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00010 336 Gene3D Transferase(Phosphotransferase) domain 1 5 316 - -
Gma16g00010 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Gma16g00010 336 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g00010 336 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 335 - -
Gma16g00010 336 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Gma16g00010 336 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE 4 335 - -
Gma16g00010 336 SUPERFAMILY Protein kinase-like (PK-like) 9 278 IPR011009 -
Gma16g00010 336 CDD STKc_MAPKKK 10 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00010 Gma-Chr16 77572 78582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00010 8 311 MAP Kinase Kinase Kinase AT1G09000 39.818 7.00e-70 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gma16g00010 Pkinase 3.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00010 - K20716 gmx:100798237 691.419