LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma16g00004	ATGGCTTCCGCTGCGCCAGGTGCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCGCGTGAAGGGGAGAGAGTTTATTACTTCCCGCAAGGTCATATGGAACAGCTTGAGGCATCTATGAATCAGGGATTGGAGCAGCAAATGCCTTCCTTCAATCTGCCGTCTAAAATTTTATGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGAAGCAGATCAAAGCGAGGTGACAAGCCCTGATGATCCTTTGCCCGAATCTCCAAGGTGTACAGTCCATTCATTTTGCAAGACACTCACTGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGGCATGCAGATGATTGCCTGCCGCCACTGGATATGACTCAACAGCCACCATGGCAAGAATTGGTTGCAACTGATCTGCATGGGAATGAATGGCATTTTAGACATATTTTTCGAGgacaacctaggcgccacttactgaccactgggtggagtgtctttgtcagttccaaaaaattagtggctggtgatgcatttatattcttaaggggtgaaaatggagagctgcgagttggagttaggagactcatgagacagcatagcaacatgccatcttctgttatatccagtcACAGTATGCATCTGGGTGTCCTGGCTACTGCATCTCATGCCATTGCCACAGGAACATTGTTTTCTGTATTTTACAAGCCCAGAACTAGCCGGTCTGAGTTTATTGTGAGTGTCAACAAGTACCTTGAAGCTCAAAGTCATAAACTTTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGTACGATTGTGGGTGTTGAAGATAATAAGTCATTAGTCTGGGCTGATTCTGAGTGGCGGTCATTAAAGGTTCAATGGGATGAACCATCGTCTATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTAACCCTCCTACAAACTCCCAGCCATCCCAAAGAAACAAGAGATCGCGGCCTCCCATTCTACCTTCAACAATGCTTGATTCTTCTCTGCAAGGTGTATGGAAATCACCAGTTGAATCTGCACCATTCTCTTATCGTGACCATCAACATGGGCGAGATGTCTATCCATCAACCAATTTCAATTCCACTGCAACTGGTTTTCTTGGTTTTGGTGGGAACTGCTCTGCTTCCAACAAGTCAATATATTGGTCTAGTAGGATCGAAAACTCCACAGAATCTTTTTCTCCTGTAGCAGTTAAAGAATTTGGAGAGAAGAGACAAGGGACTGCAAATGGATGTAGGCTCTTTGGGATTCAGTTACATGACAATTCTAATTCTAATGAAGAAAGTCTACCAATGGTCAGTTTGTCAGGAAGGGTGGGTGATGATGGCCTCCTTCCATCTTTGGATGCTGAGTCTGACCAGCATTCTGAACCATCAAATGTTAATCGATCTGATTTCCCTTCGGTAAGTTGTGATGCTGAAAAATCATGCCTGCGGTCTCCCCAGGAGTCACAGAGCAGGCAAATAAGAAGTTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACACGGTTCGATGGATATGAGGATCTGCTAAGGAAATTGGAAGAGATGTTTGACATCAATGGTGAGCTCTGCGGATCGACAAAAGAATGGCAGGTTGTGTACACTGATAATGAAGATGATATGATGATGGTTGGGGATGATCCATGGCTTGAATTTTGTAGCATTGTGAGGAAAATTTTCATCTACACTGCAGAGGAGGTGAAGAAGCTTTCACCCAAAATAGGACTTCCAATCAGTGAAGAAGTTAAACCCTGCAAAATGGACTCTGAAGCAGTAGTCAATCCTGGGGACCAGTCATCTATTTTGGGGCCTGGTTGCTAA	1998	0.4044	MASAAPGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPESPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQHSNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSLVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSNPPTNSQPSQRNKRSRPPILPSTMLDSSLQGVWKSPVESAPFSYRDHQHGRDVYPSTNFNSTATGFLGFGGNCSASNKSIYWSSRIENSTESFSPVAVKEFGEKRQGTANGCRLFGIQLHDNSNSNEESLPMVSLSGRVGDDGLLPSLDAESDQHSEPSNVNRSDFPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDINGELCGSTKEWQVVYTDNEDDMMMVGDDPWLEFCSIVRKIFIYTAEEVKKLSPKIGLPISEEVKPCKMDSEAVVNPGDQSSILGPGC	665

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma16g00004	665	MobiDBLite	consensus disorder prediction	492	519	-	-
Gma16g00004	665	Pfam	AUX/IAA family	538	631	IPR033389	-
Gma16g00004	665	PANTHER	AUXIN RESPONSE FACTOR 1	10	627	-	-
Gma16g00004	665	Gene3D	-	536	630	-	-
Gma16g00004	665	SMART	B3_2	118	220	IPR003340	GO:0003677
Gma16g00004	665	SUPERFAMILY	CAD & PB1 domains	543	618	-	-
Gma16g00004	665	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	10	627	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
Gma16g00004	665	ProSiteProfiles	PB1 domain profile.	541	634	IPR000270	GO:0005515
Gma16g00004	665	Pfam	Auxin response factor	244	326	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
Gma16g00004	665	Gene3D	-	115	220	IPR015300	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma16g00004	Gma-Chr16	24670	31341	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma16g00004	7	662	B3 DNA Binding Superfamily	AT1G59750	70.953	0.0	923

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Gma16g00004		AUX_IAA	4.2e-12	CL0072

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma16g00004	K14486		-	gmx:100819023	1362.44

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