Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00004 ATGGCTTCCGCTGCGCCAGGTGCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCGCGTGAAGGGGAGAGAGTTTATTACTTCCCGCAAGGTCATATGGAACAGCTTGAGGCATCTATGAATCAGGGATTGGAGCAGCAAATGCCTTCCTTCAATCTGCCGTCTAAAATTTTATGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGAAGCAGATCAAAGCGAGGTGACAAGCCCTGATGATCCTTTGCCCGAATCTCCAAGGTGTACAGTCCATTCATTTTGCAAGACACTCACTGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGGCATGCAGATGATTGCCTGCCGCCACTGGATATGACTCAACAGCCACCATGGCAAGAATTGGTTGCAACTGATCTGCATGGGAATGAATGGCATTTTAGACATATTTTTCGAGgacaacctaggcgccacttactgaccactgggtggagtgtctttgtcagttccaaaaaattagtggctggtgatgcatttatattcttaaggggtgaaaatggagagctgcgagttggagttaggagactcatgagacagcatagcaacatgccatcttctgttatatccagtcACAGTATGCATCTGGGTGTCCTGGCTACTGCATCTCATGCCATTGCCACAGGAACATTGTTTTCTGTATTTTACAAGCCCAGAACTAGCCGGTCTGAGTTTATTGTGAGTGTCAACAAGTACCTTGAAGCTCAAAGTCATAAACTTTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGTACGATTGTGGGTGTTGAAGATAATAAGTCATTAGTCTGGGCTGATTCTGAGTGGCGGTCATTAAAGGTTCAATGGGATGAACCATCGTCTATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTAACCCTCCTACAAACTCCCAGCCATCCCAAAGAAACAAGAGATCGCGGCCTCCCATTCTACCTTCAACAATGCTTGATTCTTCTCTGCAAGGTGTATGGAAATCACCAGTTGAATCTGCACCATTCTCTTATCGTGACCATCAACATGGGCGAGATGTCTATCCATCAACCAATTTCAATTCCACTGCAACTGGTTTTCTTGGTTTTGGTGGGAACTGCTCTGCTTCCAACAAGTCAATATATTGGTCTAGTAGGATCGAAAACTCCACAGAATCTTTTTCTCCTGTAGCAGTTAAAGAATTTGGAGAGAAGAGACAAGGGACTGCAAATGGATGTAGGCTCTTTGGGATTCAGTTACATGACAATTCTAATTCTAATGAAGAAAGTCTACCAATGGTCAGTTTGTCAGGAAGGGTGGGTGATGATGGCCTCCTTCCATCTTTGGATGCTGAGTCTGACCAGCATTCTGAACCATCAAATGTTAATCGATCTGATTTCCCTTCGGTAAGTTGTGATGCTGAAAAATCATGCCTGCGGTCTCCCCAGGAGTCACAGAGCAGGCAAATAAGAAGTTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACACGGTTCGATGGATATGAGGATCTGCTAAGGAAATTGGAAGAGATGTTTGACATCAATGGTGAGCTCTGCGGATCGACAAAAGAATGGCAGGTTGTGTACACTGATAATGAAGATGATATGATGATGGTTGGGGATGATCCATGGCTTGAATTTTGTAGCATTGTGAGGAAAATTTTCATCTACACTGCAGAGGAGGTGAAGAAGCTTTCACCCAAAATAGGACTTCCAATCAGTGAAGAAGTTAAACCCTGCAAAATGGACTCTGAAGCAGTAGTCAATCCTGGGGACCAGTCATCTATTTTGGGGCCTGGTTGCTAA 1998 0.4044 MASAAPGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPESPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQHSNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSLVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSNPPTNSQPSQRNKRSRPPILPSTMLDSSLQGVWKSPVESAPFSYRDHQHGRDVYPSTNFNSTATGFLGFGGNCSASNKSIYWSSRIENSTESFSPVAVKEFGEKRQGTANGCRLFGIQLHDNSNSNEESLPMVSLSGRVGDDGLLPSLDAESDQHSEPSNVNRSDFPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDINGELCGSTKEWQVVYTDNEDDMMMVGDDPWLEFCSIVRKIFIYTAEEVKKLSPKIGLPISEEVKPCKMDSEAVVNPGDQSSILGPGC 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00004 665 MobiDBLite consensus disorder prediction 492 519 - -
Gma16g00004 665 Pfam AUX/IAA family 538 631 IPR033389 -
Gma16g00004 665 PANTHER AUXIN RESPONSE FACTOR 1 10 627 - -
Gma16g00004 665 Gene3D - 536 630 - -
Gma16g00004 665 SMART B3_2 118 220 IPR003340 GO:0003677
Gma16g00004 665 SUPERFAMILY CAD & PB1 domains 543 618 - -
Gma16g00004 665 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 627 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma16g00004 665 ProSiteProfiles PB1 domain profile. 541 634 IPR000270 GO:0005515
Gma16g00004 665 Pfam Auxin response factor 244 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma16g00004 665 Gene3D - 115 220 IPR015300 -
Gma16g00004 665 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Gma16g00004 665 Pfam B3 DNA binding domain 118 218 IPR003340 GO:0003677
Gma16g00004 665 MobiDBLite consensus disorder prediction 346 373 - -
Gma16g00004 665 SUPERFAMILY DNA-binding pseudobarrel domain 109 247 IPR015300 -
Gma16g00004 665 MobiDBLite consensus disorder prediction 349 373 - -
Gma16g00004 665 MobiDBLite consensus disorder prediction 503 519 - -
Gma16g00004 665 Gene3D - 281 353 - -
Gma16g00004 665 CDD B3_DNA 116 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00004 Gma-Chr16 24670 31341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00004 7 662 B3 DNA Binding Superfamily AT1G59750 70.953 0.0 923
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma16g00004 AUX_IAA 4.2e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00004 K14486 - gmx:100819023 1362.44