Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02599 ATGTGCTTGCTGGGTGTTAAGTGCAATGAGTTTACCTTCCCCAGTGTGCTTAAGGCATGTTCAATGAAGAGGGATTTGAACATGGGGAGGAAGGTTCATGGGATGGCTGTTGTCACAGGGTTCGAGTCTGATGGGTTTGTTGCTAACACATTGGTTGTTATGTATGCCAAGTGCGGCCTGCTGGATGATTCTAGGAGGTTGTTTGGTGGAATTGTGGAGCGAAATGTTGTTTCATGGAATGCCTTGTTCTCTTGTTACGTGCAAAGTGAGTTGTGTGGTGAGGCTGTGGGTTTGTTTAAGGAAATGGTGAGGAGTGGAATAATGCCTAATGAATTCAGCATTTCCATCATATTGAATGCCTGTGCGGTTGCTGTTTTTCAGGACATTGCACACCCTGATGTTGTTTCTTGGAATGCAATTATTGCTGGTTGTGTTCTTCACGATTGTAATGATTTGGCTTTGATGTTGTTGGATGAGATGAAAGGCTCTGGAACTCGTCCGAATATGTTTACGCTGTCAAGTGCTTTAAAGGCCTGTGCTGCTATGGGGTTCAAGGAGTTGGGtagacagttgcattctagtttgataaagatggatgctcactcagatttgtttgctgctgttggacttgtagatatgtattctaaCAATTCTCTGGTTAATATGTATGCGAAATGTGGAAGCATAGAGGATGCTGATCGTGCCTTTTCTGAGATACCTAACAGAGGAATAGTCTCCTGGTCTGCAATGATTGGAGGATATGCTCAGCATGGCCATGGTAAAGAGGCTCTTCGGTTGTTCAATCAAATGCTTAGAGATGGTGTGCCACCCAACCATATTACTTTAGTTAGTGTTCTTTGTGCATGCAATCATGCTGGTTTGGTAAATGAGGGAAAACAATATTTTGAGAAAATGGAGCTATTTTCCCTAATAAATGAAATGTATTATGAGCAGATCATGAATCTGTTAAATCTGAATCAAAGAAACCTGCAGGTTTCCACCTTTCTCTTCCTTCATATCTTTGTTCCTTCTTCCCATTCCTCTTCTCTTCTCGCTGCCAACAATTCCTCAATTCTCCCTCCATCATACGCCATGTCCAACAGGGTTTGCAAGTTCTATGCCCGTGGAGCATGTTTGAAGGGGGATCAATGTGATTTTGCTCATGAGAAAAAGGATGATATTTGCAGCTATTATAAAAAAGGATCCTGTGCTTATGGTAGTAGATGCAGATATAAGCATGTCAAAGCTTCTCAAGCGTCATCTTCAGCAAATGGACGCCATTCTCCTGTTTTGGATCCTGTTGTGAATCATACCATTAAAGGAACATCAAGTTGGGTTCCAAAGGCTGTGAAGTCATCTTCATCGGACAAGCGTGCAAGGAGCTCACAACAAAAGAATCTGCCCTCTCTTGAAAATGATGTTGGTCAATCCAGTACTAGTAGTGTTATACCATCTGAACATTTGTTCTGTGCATTTGCTGCTGCCAACTGCCCCCTTGAAGATAAATGTTCTCGCATTCATGGAAATCAGTGCTTATACTGTAGAAAATTTTGCTTACATCCTACTGATCGAAAGGAAAAAGAAAACCATTTGAGAACTTGTGAGAAAAAGGAAAAATACCTTCAGGCTTTGAAAGATAGTCAAGAAGTAGAGTGCAATGTTTGTTTGGAACGTGTTCTGTCCAAACCTAAACCAGCTGATTGTAGGTTTGGTCTGCTTCCTGAATGTGACCATGCTTTCTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCTGGAATGGACATCAGTAATGCTGGCACTGCTAATACAGTCAGAACCTGTCCTGTTTGTCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAGCAGGAAATTATTGACAACTACAAGGCAAACTGCAAACTAATTGATTGCAAGCATTTTAACTTTGGAAATGGGAATTGTCCATTTGGGGCTAGTTGCTTCTACAAGCATACAGTGAAGCCCGGCTCTTACACATGGATACATCACAGGCCACCACCTCAACGTAGACAGAACCATTTTGATGTGCATGACATGTTGAACATGCTCCAGGATGTTGACTTAACAAGTGCAGAATATTTTTCCATCATGAGGGACTCGGACCTTTATGATGATATGGATCCATTCGAGATGATGATGGCTGCATTGTCAGAAGTGCTGGCTTCTGGTGTGGATGATTTTGGTCCCGAAGATTTCGGTGATGAAGATTTCAATCCTATGGAGGCTGCCTTGTTATCAATGATGATGCATTCTAATATGGAAGATGAAGATGACGACGATGATGAAGAAGAATACAGTGATGAAGACTACTAG 2370 0.4038 MCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSNNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMELFSLINEMYYEQIMNLLNLNQRNLQVSTFLFLHIFVPSSHSSSLLAANNSSILPPSYAMSNRVCKFYARGACLKGDQCDFAHEKKDDICSYYKKGSCAYGSRCRYKHVKASQASSSANGRHSPVLDPVVNHTIKGTSSWVPKAVKSSSSDKRARSSQQKNLPSLENDVGQSSTSSVIPSEHLFCAFAAANCPLEDKCSRIHGNQCLYCRKFCLHPTDRKEKENHLRTCEKKEKYLQALKDSQEVECNVCLERVLSKPKPADCRFGLLPECDHAFCLSCIRNWRNSAPTSGMDISNAGTANTVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLIDCKHFNFGNGNCPFGASCFYKHTVKPGSYTWIHHRPPPQRRQNHFDVHDMLNMLQDVDLTSAEYFSIMRDSDLYDDMDPFEMMMAALSEVLASGVDDFGPEDFGDEDFNPMEAALLSMMMHSNMEDEDDDDDEEEYSDEDY 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02599 789 ProSitePatterns Zinc finger RING-type signature. 576 585 IPR017907 -
Gma15g02599 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Gma15g02599 789 Gene3D Tetratricopeptide repeat domain 214 334 IPR011990 GO:0005515
Gma15g02599 789 Gene3D Tetratricopeptide repeat domain 1 126 IPR011990 GO:0005515
Gma15g02599 789 Gene3D Tetratricopeptide repeat domain 127 213 IPR011990 GO:0005515
Gma15g02599 789 ProSiteProfiles Zinc finger RING-type profile. 552 615 IPR001841 -
Gma15g02599 789 CDD RING-HC_MKRN 552 615 - -
Gma15g02599 789 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 391 414 IPR000571 GO:0046872
Gma15g02599 789 MobiDBLite consensus disorder prediction 445 478 - -
Gma15g02599 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Gma15g02599 789 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 365 732 - -
Gma15g02599 789 ProSiteProfiles Zinc finger C3H1-type profile. 364 388 IPR000571 GO:0046872
Gma15g02599 789 SUPERFAMILY CCCH zinc finger 365 389 IPR036855 GO:0046872
Gma15g02599 789 MobiDBLite consensus disorder prediction 772 789 - -
Gma15g02599 789 SMART c3hfinal6 485 509 IPR000571 GO:0046872
Gma15g02599 789 SMART c3hfinal6 644 672 IPR000571 GO:0046872
Gma15g02599 789 SMART c3hfinal6 366 390 IPR000571 GO:0046872
Gma15g02599 789 SMART c3hfinal6 391 415 IPR000571 GO:0046872
Gma15g02599 789 ProSiteProfiles Zinc finger C3H1-type profile. 644 673 IPR000571 GO:0046872
Gma15g02599 789 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 737 789 - -
Gma15g02599 789 Gene3D - 391 448 - -
Gma15g02599 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Gma15g02599 789 PANTHER MAKORIN-RELATED 365 732 IPR045072 -
Gma15g02599 789 PANTHER MAKORIN-RELATED 737 789 IPR045072 -
Gma15g02599 789 Pfam PPR repeat family 74 122 IPR002885 -
Gma15g02599 789 Pfam PPR repeat family 132 180 IPR002885 -
Gma15g02599 789 Pfam PPR repeat family 243 289 IPR002885 -
Gma15g02599 789 SUPERFAMILY RING/U-box 542 621 - -
Gma15g02599 789 Pfam Zinc finger, C3HC4 type (RING finger) 552 614 IPR018957 GO:0046872
Gma15g02599 789 TIGRFAM PPR: pentatricopeptide repeat domain 135 168 IPR002885 -
Gma15g02599 789 TIGRFAM PPR: pentatricopeptide repeat domain 245 278 IPR002885 -
Gma15g02599 789 TIGRFAM PPR: pentatricopeptide repeat domain 217 245 IPR002885 -
Gma15g02599 789 TIGRFAM PPR: pentatricopeptide repeat domain 77 111 IPR002885 -
Gma15g02599 789 SMART ring_2 552 614 IPR001841 -
Gma15g02599 789 Gene3D - 360 390 - -
Gma15g02599 789 ProSiteProfiles Zinc finger C3H1-type profile. 389 416 IPR000571 GO:0046872
Gma15g02599 789 MobiDBLite consensus disorder prediction 770 789 - -
Gma15g02599 789 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 523 620 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02599 Gma-Chr15 54124156 54138161 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02599 1 305 Glycoside Hydrolase AT3G49170 32.011 1.02e-49 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma15g02599 zf-C3HC4 2.9e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g02599 K15687 - gmx:100788886 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02599 15 54124156 54138161 Gma08g01421 08 12134382 12138868 GST
Gma15g02599 15 54124156 54138161 Gma11g01695 11 18499866 18503244 GST