Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02580 ATGAAAGCAATAAGTCCCTCCTTCCTCTGCCTTATAATTCTTGTGACCCTTTTGGCTGGTAGCATTGAAAGTGCACCAGCAAACGTGAAGCCAAGCCATTATGCTGCACCCTTCAATAGGAGTGTTTTTCCTTCTGGTTTTCTATTTGGAATAGGCTCTGCAGCTTACCAGATAGAAGGAGCAGCAGCTATAGATGGCAGAGGACCAAGTATATGGGACACCTATACTAAACAGCAACCAGGGAAGATTTGGGATCATAGTGATGGAAGTCTAGCAATTGATTTTTATCACCGGTACAAGAGCGACATAAAGATGGTGAAAGAAGTTGGGTTGGATTCATACAGATTTTCCATCTCATGGTCCAGAATATTCCCCAAGGGCAAGGGAGCAGTTAACACCTTGGGGGTCAAGTTCTACAACGATCTCATTAATGAGATTATAGCAAATGGCTTAAAGCCATTTGTCACGCTGTTTCATTGGGACCTCCCACAAGCTCTTGAAGATGAATATGGGGGATTTCTCAAACCTGAAATAGTGGAGGACTTCCGTAACTATGCTGACTTTTGCTTCAAGACATTTGGTGATCGGGTGAAGCACTGGGTAACCCTAAATGAACCATATGGCTACAGCGTGAATGGCTACAGTGGTGGAAATTTTGCACCAGGTAGATGTTCTAACTACGTTGGAAAATGCCCTGCTGGTGATTCTTCCACCGAGCCCTACATTGTTAACCACCACTTAATACTTGCTCATGGAGCAGCAGTCAATTGCTACAAGAACAAATACCAGGCTCATCAGAAAGGACAAATTGGAGTCACCATAGTGACTTTCTTCTTTGAACCAAAATCTAATAGTGATGCTGATCGCAAGGCAGCAAGGCGAGCTCTGGACTTTATGTTTGGCTGGTTTGCTAATCCCATTACATTTGGTGACTATCCTGAGAGTATGAGATCTTTAGTTGGTTCTAGACTCCCCACATTCACCAAAGCTCAATCTGAAAGTCTCAAAGGTTCATATGATTTTCTTGGTATAAATTATTACACCTCAAATTTCGTGGAATATGCTCCACCAACCACCACTAACAAGACCTATTTCACTGATATGCTAGCCAAACTTTCTTCGACCAGGAATGGTGTACCCATTGGCACACCGACTCCTCTGAGCTGGCTCTTTATCTATCCGGAGGGAATTTATAAGCTCATGACATACATAAGGGACAACTACAATAATCCACCAGTGTACATTACCGAAAATGGCGTTGCGGAATCAAAGAATGACTCACTTGCAATCAATGAAGCCCGAAAGGATGGTATTCGAATTAGATACCATGATGGCCATCTCAAATCCCTGCTTCATGCGATCAAAGATAGAGTTAATGTGAAGGGCTACTATATATGGTCATTTTCAGATAGCTTTGAATGGGATGCTGGTTACACAGCTCGATTTGGCATCATATATGTGGATTACAAGAACAATTTGAGTAGATACCCTAAGTCCTCTGCGTTTTGGCTGAAAAAATTCCTTCTCAAGTGA 1533 0.4247 MKAISPSFLCLIILVTLLAGSIESAPANVKPSHYAAPFNRSVFPSGFLFGIGSAAYQIEGAAAIDGRGPSIWDTYTKQQPGKIWDHSDGSLAIDFYHRYKSDIKMVKEVGLDSYRFSISWSRIFPKGKGAVNTLGVKFYNDLINEIIANGLKPFVTLFHWDLPQALEDEYGGFLKPEIVEDFRNYADFCFKTFGDRVKHWVTLNEPYGYSVNGYSGGNFAPGRCSNYVGKCPAGDSSTEPYIVNHHLILAHGAAVNCYKNKYQAHQKGQIGVTIVTFFFEPKSNSDADRKAARRALDFMFGWFANPITFGDYPESMRSLVGSRLPTFTKAQSESLKGSYDFLGINYYTSNFVEYAPPTTTNKTYFTDMLAKLSSTRNGVPIGTPTPLSWLFIYPEGIYKLMTYIRDNYNNPPVYITENGVAESKNDSLAINEARKDGIRIRYHDGHLKSLLHAIKDRVNVKGYYIWSFSDSFEWDAGYTARFGIIYVDYKNNLSRYPKSSAFWLKKFLLK 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02580 510 PRINTS Glycosyl hydrolase family 1 signature 338 352 IPR001360 GO:0004553|GO:0005975
Gma15g02580 510 PRINTS Glycosyl hydrolase family 1 signature 413 421 IPR001360 GO:0004553|GO:0005975
Gma15g02580 510 PRINTS Glycosyl hydrolase family 1 signature 436 447 IPR001360 GO:0004553|GO:0005975
Gma15g02580 510 PRINTS Glycosyl hydrolase family 1 signature 457 474 IPR001360 GO:0004553|GO:0005975
Gma15g02580 510 PRINTS Glycosyl hydrolase family 1 signature 481 493 IPR001360 GO:0004553|GO:0005975
Gma15g02580 510 PANTHER BETA-GLUCOSIDASE 17 12 509 - -
Gma15g02580 510 PANTHER GLYCOSYL HYDROLASE 12 509 IPR001360 GO:0004553|GO:0005975
Gma15g02580 510 SUPERFAMILY (Trans)glycosidases 34 508 IPR017853 -
Gma15g02580 510 ProSitePatterns Glycosyl hydrolases family 1 active site. 413 421 IPR018120 -
Gma15g02580 510 Pfam Glycosyl hydrolase family 1 41 507 IPR001360 GO:0004553|GO:0005975
Gma15g02580 510 Gene3D Glycosidases 23 510 - -
Gma15g02580 510 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 47 61 IPR033132 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02580 Gma-Chr15 53894295 53897935 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02580 8 508 Glycoside Hydrolase AT5G44640 48.814 5.80e-178 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g02580 K22279 K01188 gmx:100783037 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02580 15 53894295 53897935 Gma08g02138 08 19556385 19562871 PCT
Gma15g02580 15 53894295 53897935 Gma15g02081 15 38287665 38294737 PCT