Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02578 ATGGGGAAGTTATCAATCAAATTGCACGATAAGTGCAAGAACCGCAAGGAATCATCATCATGGCCATTAACAAAGTGTTTTCAGCATGGTAGTGGAAGAGATGATGCAATTGGAATTACACAAGAATGGGGTATTGACTTTTCTAATCTCTTCATTGGGCACAAGTTTTCTCAAGGTGCTCATAGTCAAATTTACCATGGTATATACAAAAAGGAACATGCTGCTGTTAAATTCGTCAAGGTTCGATATAATGATCAAAAGGGAATCCCAAAATCCCTTTTAGAGGCTCAATTTTTAAGAGAAGTCACACATCTACCTCGTCTCCACCATCAAAATGTTGTGAAGTTCATAGGCGCACACAAAGACACTGATTTTTATTGCATTCTCACGGAGTATCAGCAAAAGGGATCTTTAAGGGTGTATTTGAACAAGTTAGAGTCCAAGCCAATTTCTCTGAAGAGGGTGATAGATTTTGCTTTGGATATTGCTCGTGGAATGGAGTATATACATGCACAAGGGATCATTCATAGAGACCTTAAACCGGAGAATGTACTTGTTGATGGGGAAATTCGCCTCAAAATTGCTGATTTTGGCATTGCTTGTGAGGCTTCGAAGTGTGACTCCTTGAGGGGTACGTACCGTTGGATGGCGCCAGAGATGATCAAAGGCAAACGCTATGGGAGAAAGGTTGATGTGTACAGTTTTGGGCTTATCTTGTGGGAGTTGGTGAGTGGAACAGTACCATTTGAGGGCTTGAGTCCAATCCAGGTTGCTGTTGCTGTTGCAGATAGGAATTCAAGGCCAATTATTCCTTCACATTGCCCACATGTTTTGAGTGATTTGATAAAGCAGTGTTGGGAATTGAAACCAGAGAAGAGGCCTGAGTTCTGCCAGATTGTTCGAGTTTTGGAGCAATTAGATCAAGGCTGCAGCTTCTTGCCCCCCAAGAAACTCAAGCAACACCCTCTTTCATTACGAAAATGGATTAATGGACTTCACTCATTACTGGATTCTCAATCAATGGACAAGGAAGAGATTCCTGCTTCTTGTTCAAAGAGATGTTATGCACCCAAATTAAGCCCAATTGTTTTGCCTTTGCTAGTGTCATTAGTGCCTGTGTGGGGAAAAATGGGGCACTTCAACATTGTTCAACTCTTCATGCTCATCAGCCTTGCAGTTCTCCTTCAAGGAAGACAAGTGCAGTCTGTTGTTATTAAAATGGGTTCAGAAAGGAATGTGTTCGTGGCCAGTGCTTTGATTGATATGTATTCAAAGGGTGGTGATATTGACGAGGCTCAATGTGTGTTAGATCAGACTTCTAAGAAGAATAATGTGTTGTGGACATCCATGATCATGGGTTATGCTCAATGTGGGGGAAGTTCAGAGGCTGTGAAACTTTTTGGTTGTCTATTGACCAAGCAAGAGTTTATTCCTGATCATAATATCTGCTTTACTGCTGTCTTAACAACTTGTAATCATGCAGGATTTCTTGACAAAGGGGTGGAATACTTCAACAAAATGACAACAAATTATGGCCTGTCTCCTGATATAGATCAATATGCTTGCTTGATCTTTATGCAAGAAACGGAAATTTAA 1596 0.4085 MGKLSIKLHDKCKNRKESSSWPLTKCFQHGSGRDDAIGITQEWGIDFSNLFIGHKFSQGAHSQIYHGIYKKEHAAVKFVKVRYNDQKGIPKSLLEAQFLREVTHLPRLHHQNVVKFIGAHKDTDFYCILTEYQQKGSLRVYLNKLESKPISLKRVIDFALDIARGMEYIHAQGIIHRDLKPENVLVDGEIRLKIADFGIACEASKCDSLRGTYRWMAPEMIKGKRYGRKVDVYSFGLILWELVSGTVPFEGLSPIQVAVAVADRNSRPIIPSHCPHVLSDLIKQCWELKPEKRPEFCQIVRVLEQLDQGCSFLPPKKLKQHPLSLRKWINGLHSLLDSQSMDKEEIPASCSKRCYAPKLSPIVLPLLVSLVPVWGKMGHFNIVQLFMLISLAVLLQGRQVQSVVIKMGSERNVFVASALIDMYSKGGDIDEAQCVLDQTSKKNNVLWTSMIMGYAQCGGSSEAVKLFGCLLTKQEFIPDHNICFTAVLTTCNHAGFLDKGVEYFNKMTTNYGLSPDIDQYACLIFMQETEI 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02578 531 Pfam Protein tyrosine and serine/threonine kinase 52 303 IPR001245 GO:0004672|GO:0006468
Gma15g02578 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 478 IPR002885 -
Gma15g02578 531 SMART serkin_6 50 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma15g02578 531 Gene3D Tetratricopeptide repeat domain 376 526 IPR011990 GO:0005515
Gma15g02578 531 TIGRFAM PPR: pentatricopeptide repeat domain 482 517 IPR002885 -
Gma15g02578 531 ProSiteProfiles Protein kinase domain profile. 50 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma15g02578 531 PRINTS Tyrosine kinase catalytic domain signature 130 143 IPR001245 GO:0004672|GO:0006468
Gma15g02578 531 PRINTS Tyrosine kinase catalytic domain signature 168 186 IPR001245 GO:0004672|GO:0006468
Gma15g02578 531 PRINTS Tyrosine kinase catalytic domain signature 211 221 IPR001245 GO:0004672|GO:0006468
Gma15g02578 531 PRINTS Tyrosine kinase catalytic domain signature 230 252 IPR001245 GO:0004672|GO:0006468
Gma15g02578 531 PRINTS Tyrosine kinase catalytic domain signature 274 296 IPR001245 GO:0004672|GO:0006468
Gma15g02578 531 Gene3D Phosphorylase Kinase; domain 1 39 134 - -
Gma15g02578 531 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 11 308 - -
Gma15g02578 531 PANTHER SERINE-THREONINE PROTEIN KINASE 11 308 - -
Gma15g02578 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Gma15g02578 531 Pfam PPR repeat 417 438 IPR002885 -
Gma15g02578 531 Pfam PPR repeat 483 508 IPR002885 -
Gma15g02578 531 Pfam PPR repeat 445 470 IPR002885 -
Gma15g02578 531 Gene3D Transferase(Phosphotransferase) domain 1 135 325 - -
Gma15g02578 531 SUPERFAMILY Protein kinase-like (PK-like) 37 303 IPR011009 -
Gma15g02578 531 CDD STKc_MAP3K-like 58 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02578 Gma-Chr15 53858489 53861527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02578 5 332 MAP Kinase Kinase Kinase AT5G58950 50.445 2.19e-112 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gma15g02578 PK_Tyr_Ser-Thr 5.3e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g02578 - - gmx:100782673 679.863