LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma15g02572	ATGTGGAGATTTAAGCCATTCAGTCACAAAGAACAGACTGGTCTTGAAGGCCGCACTATAGATGTTAGCAATCTTAAAATAAATATCATTAAGGCCATTGCCGAAGGAGGGTTCTCTTGTGTCTACCTAGCTCGAGATGCTGTACACATGTCAAAGCAATATGCTTTGAAGCACATGATATGCAATGACGAAGAATCACTTGGATTGGTAAAGAAGGAGATATCTGTGATGAAGATGCTGGCAGGACATCCCAATGTTGTCACACTTCATGCACATGCCATCGTTGATATGGGTAGGACGAAAGAAGCATTCGTTGTGATGGAATTTTGTGAGAGGTCTCTGGTTAATGTGCTGGAGAGCCGAGGAGCTGGTTATTTTGATGAGAAACAGGTTCTTTTGATCTTCAGGGATGTGTGTAATGCAGTTCTTGCCATGCACTGCCAGTCCCCACCTATTGCACACCGAGACTTGAAAGCAGAGAATCTTTTATTAGGTTCAGATGGCTTATGGAAGTTATGTGATTTTGGAAGCACTTCCACCAATCACAAACGTTTTGAGAAGCCAGAAGAAATGGGGATTGAGGAAGACAATATCAGGAAGTACACAACCCCTGCCTACAGGGCCCCTGAGATGTGGGATCTGTTCCTGAGAGAAGTCATTAATGAGAAGGTGGACATATGGGCACTTGGATGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCCGAATTACCAAAATACACTTCACCTGTCACGGACTTGATAAGAGAAATGCTCCAAGCTAGACCAGATGACAGACCAGATATCACGCAGGTCTGGTTTCGTGTTAATGAGCAACTACCTATTAATTTACAGAAGTCGTTACCTGACAGACCACCTGAATCGCCCTCATCTAACAATCATGAAGGTGTGTCAATGCCCTCAAACAGATCACCTCCAATGCCTCGTAGGAACCCACCTCCTCCACCTTCATCTGGAGAACCCAAAACTTCACCACAACCACCCCCTGCTTCTAGGGGAGGGGGAAGTGGGGGTGCACTTGGTGCTTTCTGGTCCACTCAGCATGCAAAGGAATCACTTGTTGCTGAGGATAAGAGTAAACCAATTTTTGATGAAGAACCATCTAGCCACCATATTTCACCGAAACATGATAGGATTCTTCCTGAAAACGAACAGTTACCCAAAAATGTTGGTCCTAACAAAGTGGTTAACACACAAACTCATACCGTGAAAAGCAGTACACATGGAAAATTACACAAGCCTGATACTGTACCCTCCAAGGATTTTGAAATAAATTTGTTTAAGGATAAAGATCGCGTACGTGAGAGTACAACTAACTTTCAAAACCAGGCTTTTAACACTTTTGTTGCTGAATTTGATACTACTAATCTCAACTCTGGACTTAGTAACAAACCCGAAAGGGAACAAGCATTAGAGGCTGAGGTGGAGAAACTCAAAGAGCAGCTGAAGGAAGCTAACTTGGAAAAAGCTGAAATAACATCAAAGTATGAAAAGCTTTCTGCTATCTGCCGATCACAAAGGCAAGAACTGCAGGATCTGAAGCAAGCACTCACAGCTAGGACTCCTTCGCCAATTAGAGATGGTTTGAAAACCTCTCCTGCAGTTACATCATCTGCATCTGCATCTGCGAATAAGTCATGGCATGCTTTTCCAGAGGAACCTCAACAACAAAAGTCCTTCTCAGCTGAAAATACCTCCAAATCCGTCAGGGTGAAAAATGGTCAGCAGAACAAGCAACCTGTTGCACTAGCTACTGATTTTGATTCATGGGGTTTTGGATCAGATAGCTTCAGTGCTGTACCTGCTGGCAGCCCACACATGCAAAGACCTAGCAGTGCAGGAACAAAGTCTCAGGCTTTTGGTGAGGCAAACAAGTCAACTTCTCAACCAGCTGGATGGGCTGGTTTTTAA	1983	0.4372	MWRFKPFSHKEQTGLEGRTIDVSNLKINIIKAIAEGGFSCVYLARDAVHMSKQYALKHMICNDEESLGLVKKEISVMKMLAGHPNVVTLHAHAIVDMGRTKEAFVVMEFCERSLVNVLESRGAGYFDEKQVLLIFRDVCNAVLAMHCQSPPIAHRDLKAENLLLGSDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPELPKYTSPVTDLIREMLQARPDDRPDITQVWFRVNEQLPINLQKSLPDRPPESPSSNNHEGVSMPSNRSPPMPRRNPPPPPSSGEPKTSPQPPPASRGGGSGGALGAFWSTQHAKESLVAEDKSKPIFDEEPSSHHISPKHDRILPENEQLPKNVGPNKVVNTQTHTVKSSTHGKLHKPDTVPSKDFEINLFKDKDRVRESTTNFQNQAFNTFVAEFDTTNLNSGLSNKPEREQALEAEVEKLKEQLKEANLEKAEITSKYEKLSAICRSQRQELQDLKQALTARTPSPIRDGLKTSPAVTSSASASANKSWHAFPEEPQQQKSFSAENTSKSVRVKNGQQNKQPVALATDFDSWGFGSDSFSAVPAGSPHMQRPSSAGTKSQAFGEANKSTSQPAGWAGF	660

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma15g02572	660	CDD	STKc_GAK_like	26	298	-	-
	Gma15g02572	660	MobiDBLite	consensus disorder prediction	618	660	-	-
	Gma15g02572	660	SMART	serkin_6	27	291	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma15g02572	660	Gene3D	Actin; Chain A, domain 4	463	544	-	-
	Gma15g02572	660	MobiDBLite	consensus disorder prediction	301	366	-	-
	Gma15g02572	660	MobiDBLite	consensus disorder prediction	632	660	-	-
	Gma15g02572	660	MobiDBLite	consensus disorder prediction	329	352	-	-
	Gma15g02572	660	PANTHER	SERINE/THREONINE PROTEIN KINASE	1	653	-	-
	Gma15g02572	660	ProSiteProfiles	Protein kinase domain profile.	27	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma15g02572	660	MobiDBLite	consensus disorder prediction	301	324	-	-
	Gma15g02572	660	MobiDBLite	consensus disorder prediction	541	604	-	-
	Gma15g02572	660	Gene3D	-	545	556	-	-
	Gma15g02572	660	MobiDBLite	consensus disorder prediction	554	604	-	-
	Gma15g02572	660	Pfam	Protein kinase domain	29	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma15g02572	660	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Gma15g02572	660	PANTHER	NUMB-ASSOCIATED KINASE, ISOFORM A	1	653	-	-
	Gma15g02572	660	Coils	Coil	485	540	-	-
	Gma15g02572	660	SUPERFAMILY	Protein kinase-like (PK-like)	27	343	IPR011009	-
	Gma15g02572	660	Gene3D	Transferase(Phosphotransferase) domain 1	10	306	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma15g02572	Gma-Chr15	53762648	53766845	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma15g02572	26	292	Miscellaneous Gene Families	AT2G34180	30.108	1.31e-20	94.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NAK	Gma15g02572		Pkinase	2.7e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma15g02572	K08853		-	gmx:100780879	1251.5