Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02555 ATGGCGGCGACGGCGACGGCGGAAGCGAAAACCTACTGGTGCCACGAGTGCGACATGAGCGTGTCCCTGACTCTCCCACCCTCCCCTCTCCTCTGCCCTCACTGCCACACCCACTTCCTTGAACTCATGGACTCCCCAAGCCTCTCCCAAGAAAACGACGCCGAATCATCCCTCTTCGATGTCGTTTTTCAAGACGCACTCTTACTCCTCaaccctaaccctaaccctaaccctaaGCCACTTCCCTCCAAACCCCTTCCCCTCCCCTCCCTCCACGTCACCCCCTCCCTCCTCTCCTCCCTCGACCCCAACGGCGTCGTTCTCTGCGCCGTCTGCAAAGACCAAATTACCCTCAACGCCCAAGCCAAACAATTGCCCTGCCAACACCTCTACCACTCCGATTGCATCACGCCGTGGATAGAACTCAACTCGTCGTGTCCGCTATGCAGGTTTCGGTTGGAGGAAGAAGAGGAGGAAGGTGGTGACGCCGACGCTGACGCCGACGCCGTTATGACGGAGATCAGGAGGGAGATCATTGCGAGGCTGACGGAGCTGACGGAGGAGGATTTCTACGGGCTCAGGACCACGCTCAGCCACATTGCCTCGCGCCACGCGCTCATCGAAGAGAACCAGAATCATCGCGCGCAGATTGGCGAGCCTCGCGGCGGCGGCGGTGGAGGTGGCGGCGATTCGGCTTGCTGA 702 0.5855 MAATATAEAKTYWCHECDMSVSLTLPPSPLLCPHCHTHFLELMDSPSLSQENDAESSLFDVVFQDALLLLNPNPNPNPKPLPSKPLPLPSLHVTPSLLSSLDPNGVVLCAVCKDQITLNAQAKQLPCQHLYHSDCITPWIELNSSCPLCRFRLEEEEEEGGDADADADAVMTEIRREIIARLTELTEEDFYGLRTTLSHIASRHALIEENQNHRAQIGEPRGGGGGGGGDSAC 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02555 233 SUPERFAMILY RING/U-box 103 154 - -
Gma15g02555 233 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
Gma15g02555 233 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 48 - -
Gma15g02555 233 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 73 205 - -
Gma15g02555 233 MobiDBLite consensus disorder prediction 211 233 - -
Gma15g02555 233 Pfam Ring finger domain 109 150 IPR001841 -
Gma15g02555 233 ProSiteProfiles Zinc finger RING-type profile. 109 150 IPR001841 -
Gma15g02555 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 167 IPR013083 -
Gma15g02555 233 SMART ring_2 109 149 IPR001841 -
Gma15g02555 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 73 205 - -
Gma15g02555 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02555 Gma-Chr15 53510229 53513014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02555 8 193 C3H Transcription Factor Family AT3G60080 32.245 1.88e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g02555 K11982 - gmx:100775530 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02555 15 53510229 53513014 Gma08g01453 08 12528243 12530099 GST