Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02545 ATGGCCGCCGCCGACTCCTCCGCCGCTCCATCGCACCAGTTGTCGCAGAGGGAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTGCTAGGATTATTGTTGCCATTGAGAACCCACAGGATATCATTGTTCAGTCTGCCAGGCCTTATGGTCAGAGGGCAGTTCTTAAGTTTGCTCAATACACTGGTGCTCATGCAATTGCCGGAAGGCACACTCCTGGAACATTCACTAATCAGATGCAGCAATCCTACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGCCTATCAAGGAGGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGCGACACTGATTCTCCAATGCGGTATGTTGATGTTGGGATTCCTGCCAATAATAAGGGGAAGCATAGCATTGGTTGTCTCTTCTGGCTATTAGCTAGGATGGTACTGCAGATGCGGGGTACTATTCGTCCAGGTCACAAGTGGGATGTAATGGTGGACTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAGATGAAGCACCACCTGCCCAAGATTATGCCATTTCAGACTTCAATGCCGCTGGCATTGGCAGCTTCCCTGCTTCTGATGGCCAATGGCCTGCTGCAGTCGAACAACCTTGGACTGAAGAAGCACCACAACCAATCTCAGCAGCTCCTACTAACTTGACACCAGAAGCAGCTGTTGCAGGCGATTGGGGTGAGGCTGTTCCAGCTCCAGTTCCAGCTCCACAAGCTGGTGTGCCTCCAGCCCAAGCTTTTCCTCCCGCTACTGGCTGGGACTAG 936 0.5064 MAAADSSAAPSHQLSQRETDIQMMLAADVHLGTKNCDFQMERYVFKRRTDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQQSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEEAKQQEEDEAPPAQDYAISDFNAAGIGSFPASDGQWPAAVEQPWTEEAPQPISAAPTNLTPEAAVAGDWGEAVPAPVPAPQAGVPPAQAFPPATGWD 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02545 311 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gma15g02545 311 PANTHER 40S RIBOSOMAL PROTEIN SA 12 297 - -
Gma15g02545 311 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Gma15g02545 311 TIGRFAM uS2_euk_arch: ribosomal protein uS2 17 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
Gma15g02545 311 MobiDBLite consensus disorder prediction 285 311 - -
Gma15g02545 311 Gene3D - 20 225 - -
Gma15g02545 311 SUPERFAMILY Ribosomal protein S2 17 206 IPR023591 -
Gma15g02545 311 Hamap 40S ribosomal protein SA [rps-0]. 8 286 IPR027498 GO:0003735|GO:0006412|GO:0015935
Gma15g02545 311 PANTHER 40S RIBOSOMAL PROTEIN SA 12 297 IPR005707 GO:0003735|GO:0006412|GO:0015935
Gma15g02545 311 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gma15g02545 311 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gma15g02545 311 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gma15g02545 311 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gma15g02545 311 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gma15g02545 311 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gma15g02545 311 Pfam Ribosomal protein S2 24 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02545 Gma-Chr15 53408333 53410608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02545 3 270 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.444 7.30e-150 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g02545 K02998 - gmx:100818292 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02545 15 53408333 53410608 Gma08g01465 08 12651698 12654383 GST