Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02528 ATGCCAACTTTGATTTCATCTAGGTTTCTTTTGCTTGTTGGAGAGTCACTCCACATGAGAAGGGCTTTGGCCACTTCTAGGTCTGTTTTATTGCACACTAGTGTCAAGTGTATGAGCCAGGTGGAACCCCATCATGGTTCCCTAACCGTCTCTGGCATAGGTTTACAAACTGAAACTGAACCCAGAAACAGAAGCAAAACAAATAAGGTTAAGCCATTGGGTTCACCCTCTGAGAATCGCAAGAGCAAAGGAAAGCCCTTAGGCATTAATGAGAAGAAGAAGAAAGCTTTTAGGGTTGTAGAGAAACAGCAAATAGAGTCTGCCCCTTTTGCTGCAGAGTCATTTTCAGAACTTGGCCTCCCACATGTGTTGATTGAGAGGCTAGAGAAGGAGGGTTTCACCGTGCCGACCGAAGTTCAGTCTGCTGCAGTTCCCACCATTCTGAACAACCATGATGTCATAATTCAGTCTTACACGGGTTCAGGGAAGACATTGGCTTATCTGCTTCCTATACTTACAGTTGTTGGGCCGCTGAGGGGGAAAACTCCTGAAGGCAACAGTGATGGTGGGGAGAGTGGGAAGAAGTTGGGAATTGAAGCAGTGATTGTTGCTCCTTCTAGGGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGGTGCTAGGAATGGATAACAAGAGAGTGGTTCAGCAGCTTGTGGGGGGTGCAAACCGAACCAGGCAGGAAGATGCTCTCAAGAAAAATAAGCCTGCAATTGTTGTTGGCACACCTGGTAGGATAGCTGAGCTCAGTGCATCCGGGAAACTTCGCACTCATGGCTGTCGATATTTGGTATTAGATGAAGTTGATGAACTGTTGTCATTCAATTTCCGGGAAGACATGCACCGGATATTGGAGCATGTAGGGAGGAGATCAGGTGCAGACCCAAACTCAGATTCTAGAAAGGCCGAACGTCAGTTAATTATGGTTTCTGCAACTGTGCCATTTTCTGTTGTAAGGGCAGCTAGGAGCTGGGGTTATGATCCACTTCTTGTCCAAGCAAACAAAGTTGCACCACTTGAAACTGTCTCTCCCTCTGAACCCATCAGTTTGTCTCGGTCTTCACCCAGCTCAAGCCCTAGCTCGGCTATGCCATCTCCGGCAGCAGTAGAGAGTCTACCTCCTGCATTGAAACACTATTACTTTGTAACTAGGGTGCAGCACAAAGTTGATGTGTTGAGAAGGTGTATTCATGCACTGGATGCCAAATTTGTGATAGCTTTCATGAACCATACTAAGCAGCTAAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGGATGAAAGCCATGGAGTTACATGGGGATCTTGGGAAGCTAGCTAGGTCAACAACTCTGAAGAAATTCAAGAATGGTGAGGTGAGAGTTCTGGTTACAAATGAATTATCAGCAAGGGGTTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTAGACTTACCGACAGATTCAATTCACTATGCACACCGAGCTGGCCGAACTGGTCGGCTAGGTAGGAATGGTACAGTGGTAACCATATGTGAAGAGTCAGAAGTGTTTGTTGTAAAGAAATTGCAGAAGCAGCTAGCAATACCAATTGCAGCCTGTGATTTTGCAGAGGGGAAGTTTCTCGTCACTGAGGAAGAGAAAACAGTAAGCACTTCTCAAAGATGA 1689 0.4612 MPTLISSRFLLLVGESLHMRRALATSRSVLLHTSVKCMSQVEPHHGSLTVSGIGLQTETEPRNRSKTNKVKPLGSPSENRKSKGKPLGINEKKKKAFRVVEKQQIESAPFAAESFSELGLPHVLIERLEKEGFTVPTEVQSAAVPTILNNHDVIIQSYTGSGKTLAYLLPILTVVGPLRGKTPEGNSDGGESGKKLGIEAVIVAPSRELGMQIVREFEKVLGMDNKRVVQQLVGGANRTRQEDALKKNKPAIVVGTPGRIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSGADPNSDSRKAERQLIMVSATVPFSVVRAARSWGYDPLLVQANKVAPLETVSPSEPISLSRSSPSSSPSSAMPSPAAVESLPPALKHYYFVTRVQHKVDVLRRCIHALDAKFVIAFMNHTKQLKDVVFKLEARGMKAMELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVVTICEESEVFVVKKLQKQLAIPIAACDFAEGKFLVTEEEKTVSTSQR 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02528 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 530 IPR027417 -
Gma15g02528 562 SMART helicmild6 429 510 IPR001650 -
Gma15g02528 562 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 1 551 - -
Gma15g02528 562 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 141 IPR014014 GO:0003724
Gma15g02528 562 MobiDBLite consensus disorder prediction 358 379 - -
Gma15g02528 562 CDD DEADc 124 346 - -
Gma15g02528 562 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 345 IPR014001 -
Gma15g02528 562 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 1 551 - -
Gma15g02528 562 Pfam Helicase conserved C-terminal domain 407 510 IPR001650 -
Gma15g02528 562 MobiDBLite consensus disorder prediction 47 88 - -
Gma15g02528 562 Gene3D - 387 547 IPR027417 -
Gma15g02528 562 Pfam DEAD/DEAH box helicase 137 331 IPR011545 GO:0003676|GO:0005524
Gma15g02528 562 SMART ultradead3 132 356 IPR014001 -
Gma15g02528 562 MobiDBLite consensus disorder prediction 47 61 - -
Gma15g02528 562 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 405 549 IPR001650 -
Gma15g02528 562 MobiDBLite consensus disorder prediction 356 382 - -
Gma15g02528 562 CDD SF2_C_DEAD 390 519 - -
Gma15g02528 562 Gene3D - 78 348 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02528 Gma-Chr15 53128007 53129695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02528 114 538 Eukaryotic Initiation Factors Gene Family AT3G19760 23.709 5.61e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g02528 - - gmx:100812968 1048.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02528 15 53128007 53129695 Gma08g01483 08 12858798 12860922 GST