Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02514 ATGGGACACCGTTGCTGCAGCAAACAGAAGATCAAAAGAGGGTTATGGTCTCCTGAAGAAGATGAGAAACTTCTCAGATATATCAACACACATGGGCAGAAAAGTTGGAGTTCTGTGCCAAAATTTGCAGGCTTGCAAAGATGTGGGAAGAGTTGCAGGTTGAGATGGATTAATTATCTGAGGCCAGATCTGAAGAGGGGTTCCTTCACTGCTGAAGAAGAGCAGATCATTATTGACATTCATAGAATTCTTGGAAACAGATGGGCACAAATAGCCAAGCACCTACCAGGAAGAACAGACAATGAGGTCAAGAATTTCTGGAACTCCTGCATAAAAAAGAAGCTCATTTCACAAGGGTTAGATCCACAAACCCACACTCTCCTTTCTTCTCATAGGAGAAGCTCAGTATGTACCATCTCCAACATCCATCAAAATTCCAATTCCAATTCCATTTTCATTATGAGTTCGCACATACCAAATGCACCCTTGGAAAATACTAGTAAAACCTTTTCTACTTTACCTAAACCTCCAGCAAACATTGTTCAAATCCCCTCTGTCGTTGTTTCCTCAGAATTTCAAACAACAACTTCAAATAATGGAGAACCCCGCCAACATTTGCCTTATGAACTATTAATGGAGAACGCCATCACCAACATTTGTTCACCTACATACATGAACCCCTCGGCAGTTGAATTGTTTAACAATGACAACAATGTGAATTGGGTTTCTACAGTTAATGTTGAAGACTTCAGTGCTCAAACATTGGAAGAGGGAACGCAAGTGCAAGTGCAGGTGCAGCATGAGAAGGACAAGACTTGTGAGGATATGGGAATTGATGTGAGAGAAGCTAACAATGGCAATAATGAAACTAGTGCTTCTTTTGAGAGTTCTAACTTTGATTTTGGGTTGTTGGAGAGTGTACTTACCTCTGAATTCATCTCTTATGATTTTAATTGTATGGATGAACTTGCATGGAACTTTTAG 984 0.4024 MGHRCCSKQKIKRGLWSPEEDEKLLRYINTHGQKSWSSVPKFAGLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHTLLSSHRRSSVCTISNIHQNSNSNSIFIMSSHIPNAPLENTSKTFSTLPKPPANIVQIPSVVVSSEFQTTTSNNGEPRQHLPYELLMENAITNICSPTYMNPSAVELFNNDNNVNWVSTVNVEDFSAQTLEEGTQVQVQVQHEKDKTCEDMGIDVREANNGNNETSASFESSNFDFGLLESVLTSEFISYDFNCMDELAWNF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02514 327 CDD SANT 68 108 IPR001005 -
Gma15g02514 327 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gma15g02514 327 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Gma15g02514 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Gma15g02514 327 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gma15g02514 327 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gma15g02514 327 CDD SANT 16 60 IPR001005 -
Gma15g02514 327 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Gma15g02514 327 PANTHER BNAC05G40480D PROTEIN 1 315 - -
Gma15g02514 327 PANTHER MYB DOMAIN PROTEIN 55 1 315 - -
Gma15g02514 327 Gene3D - 10 66 - -
Gma15g02514 327 SMART sant 12 62 IPR001005 -
Gma15g02514 327 SMART sant 65 113 IPR001005 -
Gma15g02514 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Gma15g02514 327 Gene3D - 67 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02514 Gma-Chr15 52881956 52883679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02514 1 327 MYB Transcription Factor Family AT3G12720 47.647 1.13e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma15g02514 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g02514 K09422 - gmx:100811532 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02514 15 52881956 52883679 Gma15g02514 15 52881956 52883679 ECH
Gma15g02514 15 52881956 52883679 Gma08g01496 08 13070203 13072176 GST