LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma15g02334	ATGCCTCACCCTAAGGTCTTCTTCTACATGACCATTGGTGGGCAACTTGTTGGTCGCATCATGATGGAGCTCTATGCCAACATGACTCCTCGCACTGCCGGGAACTTCTACGCGCTCTACACCGACGAAAAAGGAGTAAGGCAGAGTTGTAAGCCCCTTCATTACAAGGGCTCATCCTTCCACCGCGTGATCTTGAGCTTCATGTGTCAGGGTGGCCACTTCACCTCCGAAAAAGGAAGTGGCAGCAAGTTGATCTATGGTGCCAAGTTCGCTGTGAAGAAACACACTGGTCCCAATATCCGCTCTATGGAAAACGCCAGTCCCATAACCAATAGATCACAGTTCTTTATTTGCGCAGAGAAGACAAAATGGCTTGATGAAATTGGGAGGTGA	393	0.4911	MPHPKVFFYMTIGGQLVGRIMMELYANMTPRTAGNFYALYTDEKGVRQSCKPLHYKGSSFHRVILSFMCQGGHFTSEKGSGSKLIYGAKFAVKKHTGPNIRSMENASPITNRSQFFICAEKTKWLDEIGR	130

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma15g02334	130	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	9	127	IPR002130	GO:0000413\|GO:0003755
	Gma15g02334	130	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	55	72	IPR020892	GO:0003755\|GO:0006457
	Gma15g02334	130	Gene3D	-	1	128	IPR029000	-
	Gma15g02334	130	SUPERFAMILY	Cyclophilin-like	2	126	IPR029000	-
	Gma15g02334	130	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	24	39	IPR002130	GO:0000413\|GO:0003755
	Gma15g02334	130	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	60	72	IPR002130	GO:0000413\|GO:0003755
	Gma15g02334	130	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	99	114	IPR002130	GO:0000413\|GO:0003755
	Gma15g02334	130	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	114	126	IPR002130	GO:0000413\|GO:0003755
	Gma15g02334	130	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	1	127	-	-
	Gma15g02334	130	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1	1	127	-	-
	Gma15g02334	130	PIRSF	Peptidylpro_ismrse	1	128	IPR024936	GO:0003755
	Gma15g02334	130	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	7	126	IPR002130	GO:0000413\|GO:0003755

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma15g02334	Gma-Chr15	49578423	49578815	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma15g02334	18	117	U-box Gene Family	AT5G67530	36.190	1.21e-12	61.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma15g02334	K01802		-	gmx:100790465	273.863