Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02278 ATGAGAAGAAAGAGTAAGGGCAAACGCAGGCGTGCGGCACCTGCAACAACTCTCACTTCTCCTTCCCTCTCCGCCATTCCCATTCTATCGGATGAACACAACAACAACGCACCAACTGCGTTTGATACCGACTGCGACGATGACAATAATGCCCTTCATCACCGCGGCTccgaacccgaacccgaacccgaactcgaaccTGTGGATATATTTGACAAAACTATCTGCATTCACTGCGATAACAAACGCGAAGAGGCGGAGGGAGTTTTAATCTGCGGCGGAAGGGGCTGCCCCGTCGCGGTCCACGCCACCTGCCTCGGCTTCGAACCTGAATTCGACGATTCCGGTAACTTTTGCTGCCCCTATTGCTGGTATAAGCGCGCCGTGGACACGTGTCGACGGTTGAGGGAGAAGGCCATGAAGGCGAAGGGAGAATTGTCACGCTTTTTTGGACAATCACGTGCGGGTGCAACAGATTATAGTGCTGCTGCACGTGTGGATCCGGCTgttcaggatagtgaagaactcatggaggaaacagaaacagaagaacaatctgaagagaataaagatgaggagggaatgGGAAAGGTGGCTGTGATGAGTAGTTCTGTGAGTGAGACCAATGATTCGGAATCTGTGGCCGAAGCAGTGAAGAAAAGGAAGGATCAGAAGAAGAAGAAGGTTGCTTCATCGAGGAAATCTTTGTCGCGACAACAAGAGCATAAGAATAAGCATTATAAGACTAGAGGGAAATTTGCCAACAAGGACGAGGAGGAAGTTACCAGCTTCAAAAGTATCAGTTTGAGGCAGCAACCACAGAGAATGAAGCAGAGTTCACTGACTGCAAAGCGAAGGAGATTACTTTGGACAGCTGAAGAAGAAAAAGTTCTCAAGGAAGGTGTATCGAAGTTCTCCACAGAAAATCAGAATATCCCTTGGAGGAAAATTTTGGAATTTGGCTGTCGTGTATTTGATAAGACTCGTACTCCTGTTGATCTCAAGGATAAATGGAAGAATATTATCTCCAAGAAAGGTTGGAAGAATTAA 1050 0.4257 MRRKSKGKRRRAAPATTLTSPSLSAIPILSDEHNNNAPTAFDTDCDDDNNALHHRGSEPEPEPELEPVDIFDKTICIHCDNKREEAEGVLICGGRGCPVAVHATCLGFEPEFDDSGNFCCPYCWYKRAVDTCRRLREKAMKAKGELSRFFGQSRAGATDYSAAARVDPAVQDSEELMEETETEEQSEENKDEEGMGKVAVMSSSVSETNDSESVAEAVKKRKDQKKKKVASSRKSLSRQQEHKNKHYKTRGKFANKDEEEVTSFKSISLRQQPQRMKQSSLTAKRRRLLWTAEEEKVLKEGVSKFSTENQNIPWRKILEFGCRVFDKTRTPVDLKDKWKNIISKKGWKN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02278 349 CDD SANT_TRF 290 342 - -
Gma15g02278 349 SMART PHD_3 75 124 IPR001965 -
Gma15g02278 349 Pfam Myb-like DNA-binding domain 290 341 IPR001005 -
Gma15g02278 349 Coils Coil 170 190 - -
Gma15g02278 349 MobiDBLite consensus disorder prediction 1 42 - -
Gma15g02278 349 ProSiteProfiles Myb-like domain profile. 282 342 IPR001005 -
Gma15g02278 349 SUPERFAMILY FYVE/PHD zinc finger 66 127 IPR011011 -
Gma15g02278 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 158 IPR013083 -
Gma15g02278 349 Gene3D - 279 343 - -
Gma15g02278 349 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 24 153 - -
Gma15g02278 349 MobiDBLite consensus disorder prediction 171 283 - -
Gma15g02278 349 SMART sant 286 344 IPR001005 -
Gma15g02278 349 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 161 348 - -
Gma15g02278 349 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 161 348 - -
Gma15g02278 349 CDD PHD_SF 75 123 - -
Gma15g02278 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 282 346 IPR017930 -
Gma15g02278 349 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 24 153 - -
Gma15g02278 349 SUPERFAMILY Homeodomain-like 285 343 IPR009057 -
Gma15g02278 349 MobiDBLite consensus disorder prediction 221 250 - -
Gma15g02278 349 MobiDBLite consensus disorder prediction 173 189 - -
Gma15g02278 349 MobiDBLite consensus disorder prediction 15 42 - -
Gma15g02278 349 MobiDBLite consensus disorder prediction 265 279 - -
Gma15g02278 349 Coils Coil 125 145 - -
Gma15g02278 349 ProSitePatterns Zinc finger PHD-type signature. 76 123 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02278 Gma-Chr15 47721326 47725799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02278 287 347 Single Myb Histone (SMH) Gene Family AT3G49850 45.161 6.20e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma15g02278 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g02278 - - gsj:114388313 375.941