Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02247 ATGGCAGGTTCAGAACGCAGTAGTAGTAGGGTTTGGCACTACGAATTCGACGTTTTCCTCAGCTTTAGAGGAGAAGACACCAGGCTCGGTTTCGTTGGAAATCTCTACAAAGCTCTGACGGAAAAGGGATTCCATACCTTCTTTCGCGAGAAGCTTGTGAGAGGAGAAGAAATCGCAGCATCACCATCTGTGGTGGAAAAAGCAATTCAACATTCAAGAGTTTTTGTTGTAGTGTTCTCTCAGAACTACGCTTCTTCTACACGGTGCTTGGAGGAGCTTCTCAGTATCCTTCGGTTCTCCCAGGATAACCGTCGACCGGTTCTGCCGGTTTTCTATTACGTTGATCCCTCCGATGTGGGACTTCAGACGGGGATCTATGGAGAATCGCTCGCTATGCATGAGAAAAAATTCAACTCTGAGTCAGACAAAGTCATGAAATGGAGGAAAGCACTCTGTGAAGCTGCTGCCTTGTCTGGTTGGCCTTTCAAACATGGGGATGGATATGAATACGAGTTGATTGAGAAGATCGTTGAGGGTGTCTCCAAGAAGATTAACCGCCCGGTTGGCCTCCAGTATCGAATGCTTGAACTGAACGGGCTTCTGGATGCTGCATCTCTCAGTGGAGTCCATTTGATAGGGATATATGGTGTGGGAGGCATTGGTAAAACAACACTTGCTCGTGCACTCTATGATTCTGTTGCTGTTCAATTTGATGCTTTATGTTTCCTTGATGAAGTGAGAGAAAATGCAATGAAACATGGCTTGGTGCATCTCCAACAGACCATTCTTGCTGAAACAGTCGGAGAGAAGGATATTCGACTGCCAAGTGTCAAGCAAGGAATTACACTACTAAAGCAGAGGCTCCAAGAGAAGAGGGTTCTTTTGGTTCTTGATGATATCAATGAGTCAGAGCAGTTGAAGGCACTTGTTGGAAGCCCAGGTTGGTTTGGTCCTGGAAGCAGAGTCATCATTACAACCCGAGACAGACAGTTGCTTGAGAGTCACGGGGTTGAGAAAATATATGAGGTAGAAAATTTAGCCGATGGTGAAGCTCTCGAATTGCTATGTTGGAAGGCTTTCAAAACTGACAAAGTATATCCAGATTTCATTAATAAAATATACCGTGCACTAACTTATGCTTCTGGCCTTCCATTGGCTCTTGAAGTTATAGGTTCAAACTTGTTTGGAAGAGAAATAGTAGAATGGGAATATACCCTAGATCTGTACGAAAAAATACATGATAAAGATATACAAAAGATACTTAAGATATCCTTTGATGCTTTGGATGAACATGAGAAGGATCTTTTTCTTGACATTGCATGCTTCTTCAAGGGATGTAAATTAGCACAAGTTGAATCAATAGTTAGTGGTCGTTACGGTGACAGCTTGAAAGCTACCATTGACGTGTTGCTTGAAAAAACACTTATAAAGATTGATGAGCATGGTCGTGTGAAGATGCATGATTTGATACAACAAATGGGAAGAGAAATTGTTCGACAGGAATCACCAAAACACCCAGGTAATTGCAGTAGGTTATGGTCTCCTGAAGATGTAGCTGATGTTTTGTAA 1569 0.4277 MAGSERSSSRVWHYEFDVFLSFRGEDTRLGFVGNLYKALTEKGFHTFFREKLVRGEEIAASPSVVEKAIQHSRVFVVVFSQNYASSTRCLEELLSILRFSQDNRRPVLPVFYYVDPSDVGLQTGIYGESLAMHEKKFNSESDKVMKWRKALCEAAALSGWPFKHGDGYEYELIEKIVEGVSKKINRPVGLQYRMLELNGLLDAASLSGVHLIGIYGVGGIGKTTLARALYDSVAVQFDALCFLDEVRENAMKHGLVHLQQTILAETVGEKDIRLPSVKQGITLLKQRLQEKRVLLVLDDINESEQLKALVGSPGWFGPGSRVIITTRDRQLLESHGVEKIYEVENLADGEALELLCWKAFKTDKVYPDFINKIYRALTYASGLPLALEVIGSNLFGREIVEWEYTLDLYEKIHDKDIQKILKISFDALDEHEKDLFLDIACFFKGCKLAQVESIVSGRYGDSLKATIDVLLEKTLIKIDEHGRVKMHDLIQQMGREIVRQESPKHPGNCSRLWSPEDVADVL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02247 522 Pfam TIR domain 16 184 IPR000157 GO:0007165
Gma15g02247 522 PRINTS Disease resistance protein signature 287 301 - -
Gma15g02247 522 PRINTS Disease resistance protein signature 380 394 - -
Gma15g02247 522 PRINTS Disease resistance protein signature 211 226 - -
Gma15g02247 522 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 160 IPR035897 -
Gma15g02247 522 Gene3D - 173 340 IPR027417 -
Gma15g02247 522 Gene3D - 345 429 IPR042197 -
Gma15g02247 522 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 522 IPR044974 GO:0006952
Gma15g02247 522 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 18 522 - -
Gma15g02247 522 SUPERFAMILY "Winged helix" DNA-binding domain 416 522 IPR036390 -
Gma15g02247 522 ProSiteProfiles TIR domain profile. 14 184 IPR000157 GO:0007165
Gma15g02247 522 SMART till_3 15 157 IPR000157 GO:0007165
Gma15g02247 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 439 IPR027417 -
Gma15g02247 522 Pfam NB-ARC domain 205 423 IPR002182 GO:0043531
Gma15g02247 522 Gene3D - 2 154 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02247 Gma-Chr15 47096620 47100523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02247 15 522 WRKY Transcription Factor Family AT4G12020 29.962 1.18e-53 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g02247 - - gmx:547614 1033.86