Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02187 ATGAGGGAGATAAAAGTGCAGAAGCTCGTCCTCAATATCTCTGTTGGCGAGAGTGGAGATCGTCTCACCAGAGCCGCCAAGGTGTTGGAACAACTTAGTGGCCAAACCCCAGTGTTTTCCAAAGCACGGTACACTGTTCGTTCCTTTGGGATTAGAAGAAATGAGAAGATTGCATGCTATGTCACTGTCAGAGGTGACAAGGCAATGCAACTTTTGGAGAGTGGTTTGAAGGTGAAGGAATATGAACTTCTTAGAAGGAACTTCAGTGATACTGGTTGCTTCGGCTTTGGTATTCAGGAGCATATCGATTTGGGAATCAAGTATGATCCTTCAACTGGTATTTATGGAATGGATTTCTTTGTTGTTCTGGAGCGTCCTGGCTATCGTGTCGGACGCCGCCGTAGGTGCAAGTCCCGTGTTGGAATTCAGCACCGTGTCACAAAGGAGGATGCTATGAAGTGGTTCCAGTTTCGTGATTAA 480 0.4625 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQFRD 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02187 159 Pfam Ribosomal protein L5 1 52 IPR031310 -
Gma15g02187 159 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 159 IPR002132 GO:0003735|GO:0005840|GO:0006412
Gma15g02187 159 ProSitePatterns Ribosomal protein L5 signature. 29 45 IPR020929 GO:0003735|GO:0005840|GO:0006412
Gma15g02187 159 SUPERFAMILY RL5-like 1 156 IPR022803 -
Gma15g02187 159 Gene3D - 1 158 IPR022803 -
Gma15g02187 159 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 1 159 IPR002132 GO:0003735|GO:0005840|GO:0006412
Gma15g02187 159 PANTHER 60S RIBOSOMAL PROTEIN L11-LIKE 1 159 - -
Gma15g02187 159 Pfam ribosomal L5P family C-terminus 56 154 IPR031309 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02187 Gma-Chr15 44895767 44897690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02187 1 158 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 94.304 1.98e-111 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g02187 K02868 - mus:103987044 297.745