Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02174 ATGACTCCAGTTAATTTGGCTGGCCAGTTTGGTGACACAACATACACTAAGGTGTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACAATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACTTTTCGTGAACCAGAAGCTGCCATGAGAGCTTGTGTGGATCCTGCTCCTGTAATCGACGGTAGGAAAGCTAACTACAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAACATGGCTTATGCACAGTGCCTTGTGTGATGTTCTCCCCCGACCACATCACTCGCAAGGTTTGCGATTATGTTGCACCTTATGGTCTTTGGAATTTCCATATTCTATATCCAATTATCAATTCTCAGGTTCGTGATCGTAGTAGAGCTATCCCTCCTTCTAATGCTTTAAAAGGAGCTAATTTTGTGTCTTGGCTTGGCTCTTTAGATGGTGGTTTCAAAGTTTCTAAAGCTTATTTAGGTCTATTTGATTTTAATGCTTTGAATATTGATCCTTTGTTTGACAATATTTGGAAGTTGAAGGTGCCAAAGAGATTTCAAATTTTATCATGGAAATTTAGGGTGAATTCCTTGCTCACCAATGAGGATAGATGCTCTAGAAATATCTCCTTCGATGCATCGTGCTAA 717 0.4114 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDPAPVIDGRKANYNLASLGVQRSKPSTPKHGLCTVPCVMFSPDHITRKVCDYVAPYGLWNFHILYPIINSQVRDRSRAIPPSNALKGANFVSWLGSLDGGFKVSKAYLGLFDFNALNIDPLFDNIWKLKVPKRFQILSWKFRVNSLLTNEDRCSRNISFDASC 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02174 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Gma15g02174 238 PANTHER BOULE-RELATED 1 112 IPR037366 GO:0003729
Gma15g02174 238 PANTHER OS01G0876800 PROTEIN 1 112 - -
Gma15g02174 238 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Gma15g02174 238 SMART rrm1_1 17 89 IPR000504 GO:0003723
Gma15g02174 238 Gene3D - 10 97 IPR012677 -
Gma15g02174 238 CDD RRM_RBM24_RBM38_like 16 91 - -
Gma15g02174 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02174 Gma-Chr15 44450257 44454323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02174 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 8.75e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g02174 - - gmx:100791707 384.8