Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02135 ATGTCAAGGCCAAGATTCAAGACAAGCATTCCTCCGGATCAACAGCGTTTGATTTTCGCCGGAAAACAACTTGAAGATGGAAGGACCCTGGCCAATTACAACATCCAAAAGGAACCAACCCTTCATCTCGTCCTCAGGCTTCGTGGTGGCATCATTGAGCCTTCCCTCATGGCTTTGGCTCGCAAATACAACCAGGACAAGATGATTTTCCGCAGGGTTATTCTTGCTCCCTATATTCATGTCCTTCTCATTTATCAGTCTGAAGATTCGTTGGTAGAGTTGTTGTAG 288 0.4583 MSRPRFKTSIPPDQQRLIFAGKQLEDGRTLANYNIQKEPTLHLVLRLRGGIIEPSLMALARKYNQDKMIFRRVILAPYIHVLLIYQSEDSLVELL 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02135 95 PRINTS Ubiquitin signature 27 48 IPR019956 -
Gma15g02135 95 PRINTS Ubiquitin signature 6 26 IPR019956 -
Gma15g02135 95 Pfam Ubiquitin family 7 48 IPR000626 GO:0005515
Gma15g02135 95 ProSiteProfiles Ubiquitin domain profile. 1 50 IPR000626 GO:0005515
Gma15g02135 95 Gene3D - 3 50 - -
Gma15g02135 95 SUPERFAMILY Ubiquitin-like 7 58 IPR029071 -
Gma15g02135 95 PANTHER UBIQUITIN-60S RIBOSOMAL PROTEIN L40 7 73 - -
Gma15g02135 95 PANTHER UBIQUITIN 7 73 - -
Gma15g02135 95 Pfam Ribosomal L40e family 52 72 IPR001975 GO:0003735|GO:0005840|GO:0006412
Gma15g02135 95 Gene3D - 51 77 IPR038587 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02135 Gma-Chr15 43215704 43216171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02135 7 73 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 88.060 4.29e-39 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g02135 K02927 - csv:101209425 120.553