Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02080 ATGGAAAACCACATCTACGCCGCCTCTTACAGCCCTTCCACCAACTACAGATCCTTCCGTGACCCCCCCGCCGACACCATGTTCCTCTCCCACCATCTCCACCACCATCGCACCGACGCCTCCTCCGCCGCCGCCCTCCGCTTCCCCTCCTCGGCCCTCTCTGCCGTCGAAGCCGCCGATATTGCCCCGCCTGGCGTCACCTCCCGAATCGCCTCCTCCTCCGCCGCCGCCGCCGCCGCGAATTTCCTCTCCACCTGGCCCCCTGCCGCCGCCGCCGCGCCCTCCGCCCTCGACCTCAAACGCTCTTCCGAGGCTCTCTACCATCCAACCATTTTGGGTACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAACCCACTGGCCAAGCGCCCTAGATATGAAAGTGCTTCCAATATGACTATATATCCACAGAGGCCAGGCGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAGTTTGGAGATAGCTGCAAATTTGACCATCCTGTTTGGGTTCCAGAGGGTGGAATCCCGGATTGGAAAGAGGTTCCAAATGTTGTTACAAGTGAAACTCCTCCTGAGAGACCAGGGGAACCGGATTGTCCATACTTTCTGAAAACTCAAAGATGCAAGTTTGGTTCAAAGTGCAAATTTAATCATCCCAAGGTTTCCTCTGAAAATGCTGATGTTTCTTCTGGCTTACCTGAGAGGCCATCTGAGCCCCCTTGCGCGTTCTACATGAAAACTGGAAAATGTAGATATGGCACTGCTTGTAAATTCCATCACCCCAAGGATATCCAGATTCAGTTGTCTGACGACTTGAGTCAAAATGTTGCACAGACACAAACAAATTCTATGATGGGTGGAGCTACAGGAGATACACAGCCAATTAAATCTCTTATATCTCCGTCGTTGCAAAATAGCAAAGGGCTTCCAGTAAGACTGGGGGAAGTTGATTGTCCATTCTACATGAAAACTGGGAGTTGCAAGTATGGTGTCAGTTGCCGCTACAATCATCCTGACAGGAATGCAATTAATCCACCCATTGCTGGATTAGGTGCCTCTATTTTGCCATCCTCGGCTGCTAATCTGAATATTGGACTTCTTAATCCAGCTGTTTCTGCTTATCAAGCTTTTGAACCAAGGCTGTCAAATCCAATGGTGGGAATTGCAGAAACTATCTATCCTCAGCGACCTGGACAGATTGAATGCGATTTTTATATGAAAACTGGCGAGTGTAAATTTGGGGAAAGATGCAAGTACCATCACCCAATTGACCGCTCAGCACTGTCACTGTCAAAGCAGGCTACTGTTAAACTCACTCCTGCAGGATTACCAAGAAGAGAGGGTGATGTTATCTGTCCTTATTATTTAAAAACTGGAACATGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTATGGAGATGGCAAAATCACAAGGAACATCAGCCAATGGAGAGGAAGCTGAAGGCGATACTTCTGCTCTGGAACAACTTTGA 1524 0.4915 MENHIYAASYSPSTNYRSFRDPPADTMFLSHHLHHHRTDASSAAALRFPSSALSAVEAADIAPPGVTSRIASSSAAAAAANFLSTWPPAAAAAPSALDLKRSSEALYHPTILGTIGQSEAWYSTNPLAKRPRYESASNMTIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGIPDWKEVPNVVTSETPPERPGEPDCPYFLKTQRCKFGSKCKFNHPKVSSENADVSSGLPERPSEPPCAFYMKTGKCRYGTACKFHHPKDIQIQLSDDLSQNVAQTQTNSMMGGATGDTQPIKSLISPSLQNSKGLPVRLGEVDCPFYMKTGSCKYGVSCRYNHPDRNAINPPIAGLGASILPSSAANLNIGLLNPAVSAYQAFEPRLSNPMVGIAETIYPQRPGQIECDFYMKTGECKFGERCKYHHPIDRSALSLSKQATVKLTPAGLPRREGDVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSANGEEAEGDTSALEQL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02080 507 ProSiteProfiles Zinc finger C3H1-type profile. 145 173 IPR000571 GO:0046872
Gma15g02080 507 MobiDBLite consensus disorder prediction 483 507 - -
Gma15g02080 507 Gene3D - 237 349 - -
Gma15g02080 507 Gene3D - 103 181 - -
Gma15g02080 507 Gene3D - 182 230 - -
Gma15g02080 507 SUPERFAMILY CCCH zinc finger 454 477 IPR036855 GO:0046872
Gma15g02080 507 ProSiteProfiles Zinc finger C3H1-type profile. 316 344 IPR000571 GO:0046872
Gma15g02080 507 ProSiteProfiles Zinc finger C3H1-type profile. 400 428 IPR000571 GO:0046872
Gma15g02080 507 ProSiteProfiles Zinc finger C3H1-type profile. 450 478 IPR000571 GO:0046872
Gma15g02080 507 SMART c3hfinal6 145 172 IPR000571 GO:0046872
Gma15g02080 507 SMART c3hfinal6 450 477 IPR000571 GO:0046872
Gma15g02080 507 SMART c3hfinal6 239 266 IPR000571 GO:0046872
Gma15g02080 507 SMART c3hfinal6 197 224 IPR000571 GO:0046872
Gma15g02080 507 SMART c3hfinal6 400 427 IPR000571 GO:0046872
Gma15g02080 507 SMART c3hfinal6 316 343 IPR000571 GO:0046872
Gma15g02080 507 SUPERFAMILY CCCH zinc finger 145 172 IPR036855 GO:0046872
Gma15g02080 507 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 90 491 - -
Gma15g02080 507 SUPERFAMILY CCCH zinc finger 202 223 IPR036855 GO:0046872
Gma15g02080 507 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 403 426 IPR000571 GO:0046872
Gma15g02080 507 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 199 224 IPR000571 GO:0046872
Gma15g02080 507 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 454 477 IPR000571 GO:0046872
Gma15g02080 507 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 242 266 IPR000571 GO:0046872
Gma15g02080 507 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 147 171 IPR000571 GO:0046872
Gma15g02080 507 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 319 342 IPR000571 GO:0046872
Gma15g02080 507 SUPERFAMILY CCCH zinc finger 402 428 IPR036855 GO:0046872
Gma15g02080 507 ProSiteProfiles Zinc finger C3H1-type profile. 197 225 IPR000571 GO:0046872
Gma15g02080 507 Gene3D - 398 492 - -
Gma15g02080 507 ProSiteProfiles Zinc finger C3H1-type profile. 239 267 IPR000571 GO:0046872
Gma15g02080 507 PANTHER CCCH ZINC FINGER/TIS11-RELATED 90 491 IPR045877 GO:0003729
Gma15g02080 507 SUPERFAMILY CCCH zinc finger 243 267 IPR036855 GO:0046872
Gma15g02080 507 SUPERFAMILY CCCH zinc finger 320 343 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02080 Gma-Chr15 37865157 37881217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02080 301 492 C2H2 Transcription Factor Family AT3G02830 33.679 2.74e-29 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma15g02080 zf-CCCH 1.5e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g02080 - - gmx:100793976 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02080 15 37865157 37881217 Gma15g02080 15 37865157 37881217 ECH
Gma08g02139 08 19592818 19599934 Gma15g02080 15 37865157 37881217 GST