Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02030 ATGTCGGTGCTGATCGTGACAAGCTTAGGGGACCTTGTCGTTGATTTGCACACCAACAAATGCCCCTTGACCTGCAAAAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAACGGGTGTCTATTTCACACTGTTCAAAAGGATTTTACTGCCCAAACTGGCGATCCAACTGGCACGGGAACTGGTGGTGATTCTGTTTACAAGTTTCTTTATGGTGATCAAGCTCGGTTTTTCAGTGATGAAATTCATATTGATCTGAAGCATTCCAAGACTGGAACAGTTTCCATGGCAAGTGCTGGAGAGAATCTGAATGCATCACAGTTTTATATCACTCTGCGTGATGACCTTGATTACCTTGATGGAAAGCACACAGTTTTTGGTGAGCTAGCTGAAGGATTCGAGACTTTAACTAGAATAAATGAGGCTTATGTGGATGAGAAAGGAAGACCCTATAAAAATATAAGTAGAATCAAGCACACATACATCCTGGAGGATCCTTACGATGATCCTTCTCAGCTATCTGATTTCATTCCTGATGCTTCTCCAGAAGGAAAACCTAAAGATGAGGTTGATGATGAAGTGCGACTTGAAGATGATTGGGTTCCCATGGATGAACAATTAAATCCGGCAGAACTTGAGGAGGTTATTAGATCAAAGGAAGCACATTCTAGAGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCTGAGATTAAGCCTCCAGACAATGTATTGTTTGTCTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACAATATTTTCACGCTTTGGAACTGTATCAATGGCTGAAATCATCCGTGATCAAAAGACCGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAACGGTCATGTGAGCAGGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACACGTGGATTTTAGTCAAAGTGTGGCAAAACTGTGGTCACAATACAGGCGGAAAGATCAAAAGGGTAAAGGTGGTGGTTGCTTCAAATGTGGTTCTACAGATCATATTGCTAAGGATTGTACGGGAGAGGCTACAATGAAACAACCACAAGCAAAATACATCTTAAAGGATGATAATGTCCAACGTGGTGGAGATAGTGCGAGATATGAAATGGTGTTTGATGAAGATAATTCACAACATCCAAGGCAAGATGTAAAACACCAAAGGCATGACAGGGATGACCCAGTCGAAAGAAAAGATCATAGAAGCCGCAGAGATCAGGATATGATAGACTCAAACAACAGAGATAGGTATGGTGATAGAAGCAGAGGGCATGGGGGAAATGGTGAGAACAAAGCACGGTCTGAAAGAGGTGTAATAGATTTGGATTCCAATGCTGATAAGAAAGACAGAGATAGGCACATGGGAAGACATGGAGATGATGATTACAAGCGGAAGGATGAGCATGATTCCAGAAAAAGAGACGAAGATTATGTCTACAAGTGGAAAGACAAGCGAGACTCAAGAAAAAGAGATGAAGATGATGAGTATAGAGAAATACAAACTAGTCGATATGATAGGAGAAACACAGATTCTAGCCATTTGGAGAGAAGGAATATCAGAGATTATAGGAAGAAACCTGAAGACAGTGGAACGCAAGATATGAAGATTGACTCCGGACAAAGAAAAGGAAGTCCAGGTGATGAGGATTACAAAAATGGAAGGGATCATGAGGATTACGAACGTAAAATGAAGGATGAGGATTACAGAAATAGAAAGGAAGAACGTGTGCATAAAAGCCAAGATATTgaagcggatgatggctacaaacgtagaagggaggatgcagattacaaacgcagaagggatgatggagattacagacatagaagggaAGAGCGTGGACACGACAGGAGATGA 1905 0.3895 MSVLIVTSLGDLVVDLHTNKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGDQARFFSDEIHIDLKHSKTGTVSMASAGENLNASQFYITLRDDLDYLDGKHTVFGELAEGFETLTRINEAYVDEKGRPYKNISRIKHTYILEDPYDDPSQLSDFIPDASPEGKPKDEVDDEVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSMAEIIRDQKTGDSLCYAFIEFEDKRSCEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQKGKGGGCFKCGSTDHIAKDCTGEATMKQPQAKYILKDDNVQRGGDSARYEMVFDEDNSQHPRQDVKHQRHDRDDPVERKDHRSRRDQDMIDSNNRDRYGDRSRGHGGNGENKARSERGVIDLDSNADKKDRDRHMGRHGDDDYKRKDEHDSRKRDEDYVYKWKDKRDSRKRDEDDEYREIQTSRYDRRNTDSSHLERRNIRDYRKKPEDSGTQDMKIDSGQRKGSPGDEDYKNGRDHEDYERKMKDEDYRNRKEERVHKSQDIEADDGYKRRREDADYKRRRDDGDYRHRREERGHDRR 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02030 634 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Gma15g02030 634 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Gma15g02030 634 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Gma15g02030 634 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Gma15g02030 634 CDD RRM_PPIL4 241 323 - -
Gma15g02030 634 SMART c2hcfinal6 341 357 IPR001878 GO:0003676|GO:0008270
Gma15g02030 634 MobiDBLite consensus disorder prediction 389 634 - -
Gma15g02030 634 Pfam Zinc knuckle 341 356 IPR001878 GO:0003676|GO:0008270
Gma15g02030 634 Gene3D - 325 377 - -
Gma15g02030 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 316 IPR000504 GO:0003723
Gma15g02030 634 SUPERFAMILY Cyclophilin-like 1 175 IPR029000 -
Gma15g02030 634 SMART rrm1_1 245 318 IPR000504 GO:0003723
Gma15g02030 634 Gene3D - 181 324 IPR012677 -
Gma15g02030 634 SUPERFAMILY RNA-binding domain, RBD 230 340 IPR035979 GO:0003676
Gma15g02030 634 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Gma15g02030 634 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 154 IPR002130 GO:0000413|GO:0003755
Gma15g02030 634 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 509 IPR035542 -
Gma15g02030 634 Gene3D - 1 174 IPR029000 -
Gma15g02030 634 CDD cyclophilin_RRM 4 170 IPR035538 -
Gma15g02030 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 322 IPR000504 GO:0003723
Gma15g02030 634 ProSiteProfiles Zinc finger CCHC-type profile. 342 355 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02030 Gma-Chr15 34969533 34998025 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02030 7 167 U-box Gene Family AT5G67530 40.994 1.18e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g02030 K12735 - gmx:100794150 1197.96