Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01961 ATGGCTGTGGAAAAACAAAGGGAAGATGAGGGCTGTGACCGTTTTCCTGTGGGTATGCGTGTTCTTGCTGTGGATGACGACCCAATTTGCCTGAAGGTGTTAGAGAATCTCCTTCGCAAATGCCAGTATCATGTTACTACAACTAATCAGGCAGTTGAAGCGCTGAAAATGTTGAGGGAAAACAGAAATAAGTTTGACCTTGTTATCAGCGATGTGAATATGCCTGACATTGATGGATTTAAGCTCCTTGAGTTGGTGGGACTTGAAATGGACCTACCTGTCATCATGTTGTCAGCACATGGTGATACAAAGCTGGTGATGAAGGGTGTCACACATGGTGCATGTGACTATTTGCTGAAACCTGTTCGAATTGAAGAGCTGAAGAACATATGGCAACATGTAGTTCGAAGAAAGAATTTTGACAGCAGGGATCAGAACAAGGCTTCCAATGAGGAGAAGGCTCCCAATATTGCTGGGGAAGGTAGTCAAGGCCTACGATCAGAAAACAGTGCTGACCAGAATAAAAGGCTTGGTAAAAAAAGGAAGGACCAAAGTGAGGAGGAAGAAGAAGATGGGGAAGAGAATGGAGATGATGAGGACCCCTCAGCACAGAAGAAACCTCGTGTAGTTTGGTCTGTTGAGCTGCATAGAAAATTTGTTGCTGCAGTTAATCAACTGGGCCTAGATAAGGCTGTTCCTAAGAAAATACTTGACCTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTTGCAAGCCATCTACAGAAATATAGACTCTATCTGAAAAAGGCAGCCCAGCAAGCTAACATGGTTGCTGCATTGGGTGGTAGTGATTCTTACCTACGTATGGGTTCAATAGATGGATATGGAGATTTTTGCACCTCGTCTGGGTCTGGAAGGATCACAAACACTACTTTACCATCATATGCATCTACGGGAATTTTCAGTAGGCTGAATTCTCCAGCTGCCTTGAACATGAGAGCAATTAGTTCTTCTGCGCTTATCCGGCCTGTTCAGTCTCAAAACATCAACTGCTCCTTAAACACACTTGGAAACATTCAGCCATCTGTTTTTCCTGCAAATCATAGCTCAAGTTTATTACAGGGAATTCCGACATCAATTGAGCTTAACCAATCTAAGCAAAGCAACTGTACAACTGGAATATCACAGTTAAGTCAAGTTGATTCAAGTGGATTTGCAGTGGCCTCTGGGTTCCCAGACAGTAGGGCTACTGTTAATGGTCCAAACAATTCTCTACCGTGTGTCTCAAATAATCATATAATGTTACAAGGAAATCCACAACAAATGCATGGCCCAGGAGCATTTAGAAATCAGTCTTCTGTTAGAGCGGCTTCTTTGTGTGCAGAATCTTTTGACGCGGGCTTATGTAGTTCTTCTAATTTGTTAGATTATAATCGGTGCAATGAAAACTGGCAGAATGCCGCTCAATTGTCTAAATTTCCTGCCCACTCCTTGCCACTTTGTGAGGCTTTCAGCAATGACCAACTGCCTCCCACTAGAATTAATGTTTCCAACTCAAGAACTCATATTGTCAACAGTCCAGTTGATTTTTCTTCTAGAATGGGAATTTCTGTTCCTTTGGAGGACACCAGAAATGAGCTGGCATGCCAAGAGGGCTTGATTGGGAATATTGTAAAGCCTTCAAGTTACACACCACAACAAAGGTGGGAAGAACATAAACTGGATTATAACCAAAACGTGGGTCATTCCTTTAATCCTGTAAATTCACATGCTTCTTCCAGTGGAGTGAAAAGTTCTATGGGGCATGGTTTAAACCAAAATAATACAATTTGTAGCAATAGAGTTGATGCATCTTTGGTTGGCCAACTAAATGGAGCATCCCCATCAATCAGCAGGTGCACTGAAGTTGAGAAATTCTCTTCAGACATTCGACTGAAGCCAAATGAAGCCTACATTTTGGAGCAAATGAAGTCCCAAGATGGATTTATGCAGAATACTTTTGGGACCTTGGATGACATAATGGGTGCAATGGTCAAAAGGGAGCAAAATGAGTTGACATTGTTGGATGGAGAAATGGGATTTGATGCCTACCCTGTTGGATCATGCAACTGA 2094 0.4236 MAVEKQREDEGCDRFPVGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAVEALKMLRENRNKFDLVISDVNMPDIDGFKLLELVGLEMDLPVIMLSAHGDTKLVMKGVTHGACDYLLKPVRIEELKNIWQHVVRRKNFDSRDQNKASNEEKAPNIAGEGSQGLRSENSADQNKRLGKKRKDQSEEEEEDGEENGDDEDPSAQKKPRVVWSVELHRKFVAAVNQLGLDKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKAAQQANMVAALGGSDSYLRMGSIDGYGDFCTSSGSGRITNTTLPSYASTGIFSRLNSPAALNMRAISSSALIRPVQSQNINCSLNTLGNIQPSVFPANHSSSLLQGIPTSIELNQSKQSNCTTGISQLSQVDSSGFAVASGFPDSRATVNGPNNSLPCVSNNHIMLQGNPQQMHGPGAFRNQSSVRAASLCAESFDAGLCSSSNLLDYNRCNENWQNAAQLSKFPAHSLPLCEAFSNDQLPPTRINVSNSRTHIVNSPVDFSSRMGISVPLEDTRNELACQEGLIGNIVKPSSYTPQQRWEEHKLDYNQNVGHSFNPVNSHASSSGVKSSMGHGLNQNNTICSNRVDASLVGQLNGASPSISRCTEVEKFSSDIRLKPNEAYILEQMKSQDGFMQNTFGTLDDIMGAMVKREQNELTLLDGEMGFDAYPVGSCN 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01961 697 PIRSF RR_ARR_type-B 1 697 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gma15g01961 697 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 262 IPR017930 -
Gma15g01961 697 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
Gma15g01961 697 Gene3D - 18 155 - -
Gma15g01961 697 MobiDBLite consensus disorder prediction 172 186 - -
Gma15g01961 697 Gene3D - 202 264 - -
Gma15g01961 697 SMART REC_2 19 131 IPR001789 GO:0000160
Gma15g01961 697 Pfam Response regulator receiver domain 21 129 IPR001789 GO:0000160
Gma15g01961 697 CDD REC_typeB_ARR-like 21 135 - -
Gma15g01961 697 SUPERFAMILY Homeodomain-like 204 263 IPR009057 -
Gma15g01961 697 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 678 IPR045279 GO:0009736
Gma15g01961 697 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
Gma15g01961 697 MobiDBLite consensus disorder prediction 141 206 - -
Gma15g01961 697 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Gma15g01961 697 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 678 - -
Gma15g01961 697 SUPERFAMILY CheY-like 18 142 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01961 Gma-Chr15 29625454 29629930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01961 1 434 Response Regulator Gene Family AT2G25180 51.591 1.45e-128 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gma15g01961 Response_reg 2.9e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01961 K14491 - gmx:100776075 1382.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01961 15 29625454 29629930 Gma15g01961 15 29625454 29629930 ECH