Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01920 ATGGCTTTCCACGACCATCTACCGCACGAAATCACGTTCCAGCCGTTTACCGAGGAGCAGCAGTTAGGTCAGAGCAGGGACATGCAGCGGCTGCTCCCGCTCTCCGGCGGGGCGCCGACGTGGCTGAACAACAGCACCGCGGCGACGCTCCGCCAGCAGAATTTCCTCCACCTGCAGCCGGAATCCGCCGCAACGACGCAGCAAAACGACGACGTTCGCGGCGGCGGCGGCAGCGGCATGGATCGGAACCGGACCGAGAGCAACTCTGAACCGGATGATTTGGCAGAATACAAAGCGGACATTTTAGGTCACCCTCTCTACGACCAGCTCCTATCGGCGCATGTCTCATGCCTGAGAATCGCCACCCCCGTTGACCAGCTTCCAAGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTCGTCGACAAGTACTCCGGCATCGGAAACGGAAACGGCGTCGTCGACGACAAAGAGCTTGATCAATTCATGACGCATTATGTTATACTGCTCTGTGCTTTCAAAGAACAATTGCAACAACATGTACGTGTTCATGCTATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAACAATCTCTACAAAGCTTGACTGGTGTATCTCCCGGTGAAGGAACGGGTGCAACAATGTCCGACGATGAAGAAGATCAGGCAGAGAGTAATGCCAACTTGTTCGAAGGAAGCATGGATGGAGCTGATAGTCTCAGCTTTGGTCCTCTTGTTCCCACAGAAACTGAAAGATCTTTGATGGAGCGTGTGAGGCAGGAGCTGAAGCATGAGTTAAAACAGGGTTACAAGGACAAGATTGTGGACATAAGAGAAGAAATTTTACGAAAGAGAAGAGCGGGAAAGCTACCAGGCGACACCACTTCCCTTTTAAAAGCTTGGTGGCAGTCACATTCTAAATGGCCATATCCAACAGAAGAGGACAAGGCAAGGTTGGTGCAGGAAACAGGGCTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGAAAAAGGAATTGGCATACTAATCCGTCGTCTTCTAGTGGCTCCAAAAGCAAACGCAAGAGTAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA 1113 0.5148 MAFHDHLPHEITFQPFTEEQQLGQSRDMQRLLPLSGGAPTWLNNSTAATLRQQNFLHLQPESAATTQQNDDVRGGGGSGMDRNRTESNSEPDDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGIGNGNGVVDDKELDQFMTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEEDQAESNANLFEGSMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSSGAGETSNQSFM 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01920 370 ProSiteProfiles ELK domain profile. 261 281 IPR005539 GO:0003677
Gma15g01920 370 MobiDBLite consensus disorder prediction 60 91 - -
Gma15g01920 370 ProSiteProfiles 'Homeobox' domain profile. 281 344 IPR001356 GO:0003677
Gma15g01920 370 MobiDBLite consensus disorder prediction 203 224 - -
Gma15g01920 370 Pfam ELK domain 261 282 IPR005539 GO:0003677
Gma15g01920 370 Pfam KNOX1 domain 97 138 IPR005540 GO:0003677|GO:0005634
Gma15g01920 370 SMART KNOX2_2 149 204 IPR005541 GO:0003677|GO:0005634
Gma15g01920 370 SUPERFAMILY Homeodomain-like 283 347 IPR009057 -
Gma15g01920 370 Pfam Homeobox KN domain 301 340 IPR008422 GO:0003677|GO:0006355
Gma15g01920 370 CDD homeodomain 284 345 IPR001356 GO:0003677
Gma15g01920 370 Gene3D - 287 364 - -
Gma15g01920 370 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 22 363 - -
Gma15g01920 370 SMART KNOX1_2 95 139 IPR005540 GO:0003677|GO:0005634
Gma15g01920 370 SMART ELK_2 261 282 IPR005539 GO:0003677
Gma15g01920 370 Pfam KNOX2 domain 153 203 IPR005541 GO:0003677|GO:0005634
Gma15g01920 370 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 22 363 - -
Gma15g01920 370 MobiDBLite consensus disorder prediction 338 370 - -
Gma15g01920 370 SMART HOX_1 283 348 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01920 Gma-Chr15 26114477 26121224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01920 95 365 Homeobox Transcription Factor Family AT5G11060 82.418 7.60e-166 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma15g01920 KNOX2 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01920 - - gmx:100816347 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01920 15 26114477 26121224 Gma15g01920 15 26114477 26121224 ECH
Gma17g00985 17 8406905 8415691 Gma15g01920 15 26114477 26121224 PCT
Gma13g01382 13 28516788 28526077 Gma15g01920 15 26114477 26121224 PCT
Gma15g01920 15 26114477 26121224 Gma17g00985 17 8406905 8415691 PCT
Gma15g01920 15 26114477 26121224 Gma13g01382 13 28516788 28526077 PCT