Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01914 ATGGCTGGAATGCTTCCTGGAGTTGAATGTGCTAGAAGGAGAAGGTTACATCGATGTTTGGATTCAAATTCAACTTCTTTAACTTCACATGCATCCACAAGGCGTTCTTCTTTCTGTTTGTATGCTAGTAACCACGAATGTCGCCTTTCCTTATCCTCTTCACTGCAAAGAAGCATGTTATACCAGCCACACCCTGATGAGAATATGGGAGGAGTGGTCAGAGAAGCCAAACAGAGATTGGATGACAAGTTCAGAGCTCATAGGAATTCAGAAAACAAAAGGCAAAACAGCACAAAATGTGTGGAGGGCAGAAGAACACGCATAGCAGAGTTTCACACAGAGGTATATGGGTCGAAGAAAAGTGGTTCAAGGAGGTTCAGTTGGACCAAATGGAGCTGGAAGGCCTCAGAACAAGAGGATTGTGCTGTGTGCTTGGAATCATTCAGAGTTGGAGAGACACTGATCCATCTTCCTTGTGCCCATAGGTTCCATGACAGATGCTTAAAACCATGGTTGGAAAATAATTCTCATTGTCCATGCTGTAGAACCACCATTTTTTCCCTCTAG 567 0.4374 MAGMLPGVECARRRRLHRCLDSNSTSLTSHASTRRSSFCLYASNHECRLSLSSSLQRSMLYQPHPDENMGGVVREAKQRLDDKFRAHRNSENKRQNSTKCVEGRRTRIAEFHTEVYGSKKSGSRRFSWTKWSWKASEQEDCAVCLESFRVGETLIHLPCAHRFHDRCLKPWLENNSHCPCCRTTIFSL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01914 188 Coils Coil 73 93 - -
Gma15g01914 188 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Gma15g01914 188 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 184 - -
Gma15g01914 188 Pfam Ring finger domain 140 182 IPR001841 -
Gma15g01914 188 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 184 - -
Gma15g01914 188 CDD RING-H2_PA-TM-RING 140 182 - -
Gma15g01914 188 SMART ring_2 141 181 IPR001841 -
Gma15g01914 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 186 IPR013083 -
Gma15g01914 188 SUPERFAMILY RING/U-box 126 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01914 Gma-Chr15 25733032 25734280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01914 1 85 C3H Transcription Factor Family AT2G15580 46.316 7.37e-18 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01914 - - gmx:100527583 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01914 15 25733032 25734280 Gma15g01914 15 25733032 25734280 ECH