Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01910 ATGTGTGTGAAGGACCAAGAGAAAGATATGATGGATAGCACCACAACCAATTCATGGCCTTTGCAACATTGCCACCTTTTGCTCAAGACTCACATGGACAAAAAAGGATCTTTCCTCAGAACTTCAAGTGATGACACCACCAACATCAGTGTTCAAAATTCCTTTCCTCTAGAAAGCATATGTGAGGACACAGTGGTTGTAGACAAGAAACAGAATCTGATGAATTTTGTTCCAGCTCTTCGGTCTGGAGAGTGGTCTGATATTGGAGAACGTCCTTACATGGAGGATACTCACATATGCATTGGAGATTTGGTAAAGAAGTTTAATTATGATGTACTTTCTGGGGAGGCTGTTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTCCGTGATAATCTGCcaagagttattgttgaggatgttaactttcctttggagcttgagaaggtggtcaaaaggtcatttgtggagactgatgctgcatttctaaaaacatcctctcacgagccttccctttcttctggtacaactgcaataactgcaattaTATTTGGAAGGTCTTTACTTGTAGCCAATGCTGGAGATTGCCGAGCTGTTTTGTCCCACCATGGAAGGGCCATAGAAATGTCCAAAGATCATAGGCCAAACTGCATCAATGAAAGGACACGAGTTGAGTCCCTAGGTGGCTTCATTGATGATGGTTACCTAAATGGCCAGTTAGGTGTCACTCGTGCTCTTGGAGACTGGCACATTGAAGGAATGAAGGAAATGAGTGAAAGAGGAGGACCACTGAGTGCTGAACCTGAACTTAAATTGATGACATTGACCAAAGAAGATGAATTCTTGATAATTGCTAGTGATGGAATATGGGATGTTTTTAGTAGCCAAAATGCTGTAGATTTTGCTAGAAGGAGGCTTCAAGAGCACAATGATGAGAAACAATGCTGCAAGGAAATAGTGCAGGAAGCAAGCAAGAGAGGATCAACAGATAACTTGACAGTTGTGATGGTGTGTTTTAACTTAGATCCTCCACCACCTGTGGTTGTGGAAAGAACACGAGTAAGAAGAAGCATATCTGCAGAGGGACTTCAGAATCTTAAATGCCTGCTAAAACAATAA 1140 0.3658 MCVKDQEKDMMDSTTTNSWPLQHCHLLLKTHMDKKGSFLRTSSDDTTNISVQNSFPLESICEDTVVVDKKQNLMNFVPALRSGEWSDIGERPYMEDTHICIGDLVKKFNYDVLSGEAVSFYGVFDGHGGKSAAQFVRDNLPRVIVEDVNFPLELEKVVKRSFVETDAAFLKTSSHEPSLSSGTTAITAIIFGRSLLVANAGDCRAVLSHHGRAIEMSKDHRPNCINERTRVESLGGFIDDGYLNGQLGVTRALGDWHIEGMKEMSERGGPLSAEPELKLMTLTKEDEFLIIASDGIWDVFSSQNAVDFARRRLQEHNDEKQCCKEIVQEASKRGSTDNLTVVMVCFNLDPPPPVVVERTRVRRSISAEGLQNLKCLLKQ 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01910 379 PANTHER PROTEIN PHOSPHATASE 2C 1 368 IPR015655 GO:0004722|GO:0006470
Gma15g01910 379 ProSitePatterns PPM-type phosphatase domain signature. 120 128 IPR000222 GO:0043169
Gma15g01910 379 Coils Coil 313 333 - -
Gma15g01910 379 ProSiteProfiles PPM-type phosphatase domain profile. 81 346 IPR001932 -
Gma15g01910 379 SMART PP2C_4 71 344 IPR001932 -
Gma15g01910 379 SUPERFAMILY PP2C-like 72 347 IPR036457 -
Gma15g01910 379 Pfam Protein phosphatase 2C 93 338 IPR001932 -
Gma15g01910 379 SMART PP2C_SIG_2 96 346 IPR001932 -
Gma15g01910 379 CDD PP2Cc 81 346 IPR001932 -
Gma15g01910 379 Gene3D - 64 349 IPR036457 -
Gma15g01910 379 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01910 Gma-Chr15 25640746 25644492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01910 47 377 PP2C-type Phosphatase Gene Family AT2G25620 57.015 2.49e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Gma15g01910 PP2C 1.5e-67 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01910 K14803 - gmx:100813157 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01910 15 25640746 25644492 Gma15g01910 15 25640746 25644492 ECH
Gma17g00994 17 8464347 8467668 Gma15g01910 15 25640746 25644492 PCT
Gma13g01457 13 29314204 29317065 Gma15g01910 15 25640746 25644492 PCT
Gma15g01910 15 25640746 25644492 Gma17g00994 17 8464347 8467668 PCT
Gma15g01910 15 25640746 25644492 Gma13g01457 13 29314204 29317065 PCT