Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01888 ATGATAAAGACAGATGTCTTAACATACAAAAAGTGTAACCCATGCTTTCTTCTTCTTCTTCTTTTCTTTTATAGTTTTGACTATGTCGTGTTTTCAGCAAGAGCAGACCTTCCAGCTGAGTTGGCCACTCTGAGTAAACAGCCAACAAACTACTTCTACAAAATTTTGACAGCCAATGACACTAGCACTCGTGGGGGATTCTCTATTCCCTGCAGGGCATCTGAAAAAGTTTTTCCTCCATTGGACTTTTCACAACAGCCTCCTTGTCAAGAGTTAATCTCAAGGGATTTGCATGGTAATGAGTGGAAATTCAGACATATCTTCCGTGGCCAGCCCGAAAGGCATCTACTTACAGCAGGATGGAGTGTGTTTGTGAGTGCTAAAAGACTATCTAATTACTGA 402 0.4104 MIKTDVLTYKKCNPCFLLLLLFFYSFDYVVFSARADLPAELATLSKQPTNYFYKILTANDTSTRGGFSIPCRASEKVFPPLDFSQQPPCQELISRDLHGNEWKFRHIFRGQPERHLLTAGWSVFVSAKRLSNY 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01888 133 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 130 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma15g01888 133 ProSiteProfiles B3 DNA-binding domain profile. 52 133 IPR003340 GO:0003677
Gma15g01888 133 Gene3D - 50 132 IPR015300 -
Gma15g01888 133 PANTHER AUXIN RESPONSE FACTOR 34 130 - -
Gma15g01888 133 SUPERFAMILY DNA-binding pseudobarrel domain 36 131 IPR015300 -
Gma15g01888 133 Pfam B3 DNA binding domain 52 131 IPR003340 GO:0003677
Gma15g01888 133 CDD B3_DNA 51 130 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01888 Gma-Chr15 24347665 24348320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01888 37 130 B3 DNA Binding Superfamily AT1G30330 80.851 1.57e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma15g01888 B3 9.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01888 - - lja:Lj0g3v0288979.2 178.333