LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma15g01862	ATGAGGCAGTCTTTTGATCCTTCATTTTTGGGTCCTTCCAAGATTCCATCTATAAAAGTACCTGGAAAAGCAGGGAATGGTGCATGGGAGGCTTTGTCTGGATCTGATTCCTACCATGCTTCATCTGATGCTAGCCTCTTCTCTAGCTCATTACCTGTTCTTCCGCATGAAAAATTGAACTTGAATGAAACTGCAAATGGTTATCAATCTATTGATGACATCTCATCTGGTTTTAAGAAGCTCCATCAAGATGCAGATGGAAATGGTTCACTTGAAGATGGTGATACTCATGCAATTGGACCTGCCCTTCCTGATGATGAGGAGGAGCTTTTAGCTGGCATAACGGATGATTTTGACCTAAGTGGCTTGCCTGGTTCCCTTGAGGACTTGGAAGAGTATGATCTTTTTGGTAGTGGTGGAGGTATGGAACTAGAAACTGATCCACAGGAAGGTCTCACTGTGGGGTTGTCTAAGTTAAGCTTCGCTGATAGTACCGTTGGCAATGGTTTGCCCCCTTATTCATTTCCCAATGGTGTGGGAACTGTTGCGGGAGAACATCCTTATGGAGAGCATCCTTCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTGGAGGACTCAGAGCTGAGAGCCCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCATGCAAACATCGGGGATTTGTAATGATATCCTATTATGATATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTCTGCGGCGCAGGAAACTAGACATTCATTTCTCTATACCAAAGGATAATCCATCAGACAAGGATATCAACCAGGGAACATTGGTAGTTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTGCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTCTATGATGTTAGAGCGGCCGAAGCAGCACTTAAATCATTAAACAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCAAGTAGGCCTGGAGGAGCTCGTAGAAATTTGATGCTCCAATTAAATCAAGAGCTTGACCAAGATGAATCTCGGAGTTTCCGATACCAAGTGGGTTCTCCTGTAGCTAACTCTCCTCCAGGTAACTGGTTACAGTTCAACAGCCCTGTTGAGCAGAATTCAATGCAGACTATCAATTATTCTCCTGGTTCTAGGATCATAAGCCCAACAACAGGCAATCATTTACCTGGATTAGCTTCAATTTTGCAACCACAAGTATCTAACACTGTGAAGGCTGCTGCTATTGGCAATGACTTGGAAAGGAGCAGTCAAGGAGAGCACATATTTACCGGTATGAATTCATCACACGGAGCTACTTTTCAATCGCATTCACTTCCAGAGCCAAAATTCAGCCAATATCGTGGAGCATTGTCCTCAATTGGTCCATCAACTTCAAATGGATCCTCAGTGGAAACTTTGTCTGGGCCACAGTTCCTATGGGGAAGCCCAACTCTCTACTCGGAGCATACCAAACCTTCAGCTTGGCCAAGATCATCTGTGGGGCATCCATTTGCATCGAATGGAAAGAGCCATGCCTTCCCATATTCAACTCAGAATAGTTCTTTTGTTGGTTCATCACAGCATCTTCACCACCATCATGTCGGCTCCGCCCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTCCATCCCGAGTCATCTGAAACTTCATTCATGAATAATGTTGGCTATGGAGGCATTGGTCCAGGGCATAATGATGGAAATCACATGGTTAATGTGGGTGGATCTGTTAATCCTAACATTACTATCCCGAGAAATATATCTGATAATGGTTCATCAAACTTCAGAATGAGATCTTCTCCTAGGCTTAGCCCTGTCTTTTTGGGAAATGGCCCTTTTCCAGGACTGCCACCTACCACTTTGGAGGGTTTGGCTGACCGTGCTCGGAGTAGATGGATAGAGAACAATGGGAGCCAAGTTGATAGCAAGAAACAATTTCAGCTCAACTTGGATAAGATTAAAAGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCGAACAAATACACCTCTAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTACTTGCCAATTGACTTTAAGAATAAATGCAATGTGGGCTATGCATTTATCAACATGCTGTCTCCCTCTCTTATTATTCCATTCTTCGAGACATTCAATGGGAAGAAATGGGAGAAATTTAATAGTGAAAAAGTTGCTTCTTTGGCATATGCTAGAATTCAAGGAAAGTCTGCCCTCGTGAGCCATTTTCAAAATTCAAGTCTGATGAATGAAGATAAGCGATGTCGTCCTATTCTCTTTCACTCCGAGGGTTCTGAAGTTTGTGATCTGATTGTACAAGACCACCACCTTCCCTCCAACTCCAACAATCTAAACATTCAGGCACCAAGGCCAAGTGAGTTCTATTCAAGTGATTTTGCTGGGAGTCCTCCAAAGGCAGGCCCTTCTGCAAGCTTGGATGCAAATTAA	2589	0.4264	MRQSFDPSFLGPSKIPSIKVPGKAGNGAWEALSGSDSYHASSDASLFSSSLPVLPHEKLNLNETANGYQSIDDISSGFKKLHQDADGNGSLEDGDTHAIGPALPDDEEELLAGITDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQEGLTVGLSKLSFADSTVGNGLPPYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPVANSPPGNWLQFNSPVEQNSMQTINYSPGSRIISPTTGNHLPGLASILQPQVSNTVKAAAIGNDLERSSQGEHIFTGMNSSHGATFQSHSLPEPKFSQYRGALSSIGPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSAWPRSSVGHPFASNGKSHAFPYSTQNSSFVGSSQHLHHHHVGSAPSGLPFERHFGFHPESSETSFMNNVGYGGIGPGHNDGNHMVNVGGSVNPNITIPRNISDNGSSNFRMRSSPRLSPVFLGNGPFPGLPPTTLEGLADRARSRWIENNGSQVDSKKQFQLNLDKIKSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFFETFNGKKWEKFNSEKVASLAYARIQGKSALVSHFQNSSLMNEDKRCRPILFHSEGSEVCDLIVQDHHLPSNSNNLNIQAPRPSEFYSSDFAGSPPKAGPSASLDAN	862

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma15g01862	862	CDD	RRM3_MEI2_like	698	783	IPR034454	-
	Gma15g01862	862	Gene3D	-	278	377	IPR012677	-
	Gma15g01862	862	Pfam	RNA recognition motif 2	695	791	IPR007201	-
	Gma15g01862	862	Gene3D	-	183	277	IPR012677	-
	Gma15g01862	862	CDD	RRM2_MEI2_like	278	348	-	-
	Gma15g01862	862	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	3	853	-	-
	Gma15g01862	862	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	281	346	IPR000504	GO:0003723
	Gma15g01862	862	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	196	260	IPR000504	GO:0003723
	Gma15g01862	862	PANTHER	PROTEIN MEI2-LIKE 2	3	853	-	-
	Gma15g01862	862	SMART	rrm1_1	280	348	IPR000504	GO:0003723
	Gma15g01862	862	SMART	rrm1_1	697	773	IPR000504	GO:0003723
	Gma15g01862	862	SMART	rrm1_1	195	263	IPR000504	GO:0003723
	Gma15g01862	862	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	194	267	IPR000504	GO:0003723
	Gma15g01862	862	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	279	352	IPR000504	GO:0003723
	Gma15g01862	862	SUPERFAMILY	RNA-binding domain, RBD	697	781	IPR035979	GO:0003676
	Gma15g01862	862	MobiDBLite	consensus disorder prediction	1	22	-	-
	Gma15g01862	862	CDD	RRM1_MEI2_like	193	269	IPR034453	-
	Gma15g01862	862	MobiDBLite	consensus disorder prediction	841	862	-	-
	Gma15g01862	862	SUPERFAMILY	RNA-binding domain, RBD	191	354	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma15g01862	Gma-Chr15	23471086	23477674	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma15g01862	189	387	Eukaryotic Initiation Factors Gene Family	AT1G71770	25.561	7.32e-07	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma15g01862	-		-	gmx:100800877	1717.98