Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01859 ATGGGACGCCCAAAATTAATCTTAAAGCCCATCCCAAATGGGAGAGATCGTGATTTGGCTTTCACGAAGAGAAAGAAAGCACTAATGAAGAAAATGACTGAATTTTCTAACGTGTGTGGAGTCAAAGCTTGCATGATTATGTATGATGGCAATTATGGTGATGCTCCACCACTGACTTGGCCCCAAGATGACCCCATTGAGGTGCACTCCATCATCAAAAGGTATGAGAGCATAAAGAATGAGAAACTTCCCAAGAACTTCGATCTCAATAATTTTTTTGAGATTAGGAAGAACATGGTTGACAATGATATTTCCAAAGTCCAAAAAGAGACCCTCAAGATCAAATATCCAACTTGGCATCCAAGCTTCAACAACCTAGGTGTAGAGGAGCTGAGGAATTTCATCGCTAGGTTGGACATTAAGCTTGAAGCTTGTAATCAACGAAACGAAATGTCGAAACACAACCATCAAAATGAAGCCAACTTCAATTTCATGCAAAGCATGGTTCAATCAGACAGTGTTGCTCCAAACCCAAGCCAACTCAATTTCATGCAGGAAATCTCTCAAAATCAATTTTCTCTTGCTCCTATGAGGCCACTTAATGATGGTAACCAGGTAGCATCTTACCTACTTAATCTTGACATAGGTTCTAGTTCTCAATCCCAAATGCTTAACTTTGATCCAAATCTTATGCAACTAATTGCCAAGAATCAAGGGGTGATGGATATTACTAATCAAGTTGATGTGCCTCTGGCTTGTGCAAATCAAATTAATGCTTTAGGAAATTTTACAAATCAACATGATGTGCCTGTAGATTTGACTAATCATCAACTTGGTGAGTGTTTGGACTATTTTAGCCAACTTGATGAAATTGAAGATTTGACTAGTCAACTTAATGAGATTGTGAATTCGGGTAGTCAACCTGGTGAGTCTATAATTTGGACTAATCAACATGGTGTGCCAGTGATTGGGGGAAGTACTACAGCAATGAATGGTGCTACTAATTATGGTACAAAGTTTCATGGAGATGAACACAACCAAGAGTCCTCACATTGCAATTACAATGAAGTTGTGCAATCAATGCAACCCTATAATTATGATGCCGCATTGCAGAATATTGCTTCTCAGTCAGAAAATGTGCAGCAAATAGTAACTTGGCCTTCCCTTCTACCACCAAAGGATGAATTTCAGACAGATCACTACAACAAGACGCTTCAAAATCAGTATTCCAACCACTTCATTTAG 1245 0.3888 MGRPKLILKPIPNGRDRDLAFTKRKKALMKKMTEFSNVCGVKACMIMYDGNYGDAPPLTWPQDDPIEVHSIIKRYESIKNEKLPKNFDLNNFFEIRKNMVDNDISKVQKETLKIKYPTWHPSFNNLGVEELRNFIARLDIKLEACNQRNEMSKHNHQNEANFNFMQSMVQSDSVAPNPSQLNFMQEISQNQFSLAPMRPLNDGNQVASYLLNLDIGSSSQSQMLNFDPNLMQLIAKNQGVMDITNQVDVPLACANQINALGNFTNQHDVPVDLTNHQLGECLDYFSQLDEIEDLTSQLNEIVNSGSQPGESIIWTNQHGVPVIGGSTTAMNGATNYGTKFHGDEHNQESSHCNYNEVVQSMQPYNYDAALQNIASQSENVQQIVTWPSLLPPKDEFQTDHYNKTLQNQYSNHFI 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01859 414 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 49 IPR002100 GO:0003677|GO:0046983
Gma15g01859 414 PANTHER PROTEIN, PUTATIVE-RELATED 5 269 - -
Gma15g01859 414 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Gma15g01859 414 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Gma15g01859 414 Gene3D - 14 98 IPR036879 GO:0003677|GO:0046983
Gma15g01859 414 Coils Coil 128 148 - -
Gma15g01859 414 PANTHER MADS BOX PROTEIN 5 269 - -
Gma15g01859 414 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01859 Gma-Chr15 23312947 23314191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01859 1 150 Type I MADS-box Gene Family AT5G55690 29.221 4.12e-16 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma15g01859 SRF-TF 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01859 - - ccaj:109791338 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01859 15 23312947 23314191 Gma09g00820 09 11776112 11776900 GST