Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01817 ATGGGCAATGTGGGTTATGGAAGTAATGTGGATGTGAATCATTTGTTGTCACAAATAGAGGAGCTGAAGCGGAAGGTTGTAGTAAATGAAGAAAAAGTTTGTTTGTATAAGGAACAAATCATGGAGTTGAAGAAGATGCTGGCTAAAGAAGAACATCAATCTCAAGCAAGTTATGAAGTTGTTGTTGAACTAAGGAAAAAAATTGCAAAGCAACATACTAAGATTAACACTGAACAAAAGATGGTCAAGCCGCGAGCGAGGTTTCGTTTCGTTCAGTTCACACATTCTAATCTCTATCGATTCCTCTTCCATTTTCTCAATTCACTACACCCCAGTTTATGGGAAGCCAACTTGTGTGTAATGGGTGTAGGAACATCTTGGTTTACCCTAGAGGAGCAACCAATGTTTGCTGTGCATTGTGCAACACCGTTACCTCTGTTCCTCCTCCTGGAATGGACATTACTAGAATCTAATCAAGTCATTCATTGTACGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTTCCTCAGTAAAATGTGCAATTTGTCGCTATATTACTAATGTCAGTATGACGAATGGAAGGCTTCCAATTCCTGTACAGAGACCAAATGGAACAGCCAACTCTGGAACAGTATCTTCTACTTCATCGCTGCAGTCAATGCCTCATTCTCAGAGCCAAACTGTCGTAGTAGAAAATCCCATGTCTGTTGATTCGAGTGGGAAATTGGTGAGCAATGTTGTTGTGGGCGTTACAACAGAGAAGAAATGA 774 0.4083 MGNVGYGSNVDVNHLLSQIEELKRKVVVNEEKVCLYKEQIMELKKMLAKEEHQSQASYEVVVELRKKIAKQHTKINTEQKMVKPRARFRFVQFTHSNLYRFLFHFLNSLHPSLWEANLCVMGVGTSWFTLEEQPMFAVHCATPLPLFLLLEWTLLESNQVIHCTNCRTTLMYPYGASSVKCAICRYITNVSMTNGRLPIPVQRPNGTANSGTVSSTSSLQSMPHSQSQTVVVENPMSVDSSGKLVSNVVVGVTTEKK 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01817 257 Coils Coil 12 32 - -
Gma15g01817 257 PANTHER PROTEIN LSD1 157 257 - -
Gma15g01817 257 Pfam LSD1 zinc finger 163 187 IPR005735 -
Gma15g01817 257 MobiDBLite consensus disorder prediction 200 225 - -
Gma15g01817 257 PANTHER PROTEIN LSD1 157 257 IPR040319 -
Gma15g01817 257 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 161 189 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01817 Gma-Chr15 21604022 21611722 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Gma15g01817 zf-LSD1 7.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01817 - - gmx:100792570 182.185