Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01690 ATGGGGGCGAAGAAGCAGAGCCCGGGAGTGAAAAACGAGGGTAATGGCACCAACAGTGATGTTTTCGCTTCGTGCTCATTCTCCAGCCTTGGACTTGAGTCCAATTTATGTGAACAACTTCGTGAGAGGTTGGGGTTTGAAGTTCCgACGCTGGTGCAAGCTCAAGCAATTCCTGTTATTCTCTCGGGGCGGCATGCATTGGTGAATGCTGCAACGGGCACGGGGAAGACTGTTGCGTATCTGGCTCCGATTATTCATCACTTGCAGGGTTATGAAAATCGGATTCAGCGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGGGAGCTATGTTTGCAGGTTTATGAAATTCTTCAAAAGTTACTGCATTGGTTTCATTGGATTGTTCCCGGATACATTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCTAGGCTGCGCAAAGGCATATCAATTCTTATAGCAACTCCTGGGAGCCTTTTAGATCACTTGAAGAACACAACATCGTTCTTGTACTCAAATTTACGCTGGATAATTTTTGACGAAGCTGATCGGATTTTGAAATTGGGATTTGGAAAAAATATAGAGGAAATACTAGATCTTTTAGTTCCAACACACTCTAAAATGCAAAGACAGAATTTGCTTTTATCTACCACCTTAAATGAGAGAGTGAACCACCTTGCTAAAATGAGTCTAGACAATCCAGTTATGATTGGTCTTGATGAATCTGATGAAGACAGTGAAGATAAGTATTACAGTAAAGTACCAACAGTTGGAGATTATAAAGTCCCATTACAGTTGATTCAGAGATACATGAAAGTGCCTTGTGGTTCACGGCTTCCTGTACTTCTTTCAATTCTAAAGCATCTCTTTGAAAGGGAACCTTCACAAAAGGTTGTTTTATTCTTTTCAACATGTGATGCAGTCGACTTTCACTATTCACTGTTAAGTGAATTTCAATTTTCATCCTATTCACAAACAGAAGGGGTCCAACAGGTGTTTCTTGGATGCAAAACTTTCCGGTTACATGGTAATATGCAACAAGAGGACCGGAGAACCAGTTTTCAGGCCTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCCACTGATGTTTCTGCTAGAGGATTGGATTTTCCAAAGGTTAGGTTCATCATACAATATGATTCTCCTGGGGAAGCTACGGAATATGTTCATAGAGTTGGTAGAACTGCTCGACTGGGCGAAAGAGGAGAGTCATTAGTATTTCTACAACCAGTTGAAATAGACTATTTACAGGACTTGGAGAAACATGGTGTCTCACTCACGGAGTATCCTGTCCTCAAAGTGTTGGATAATTTTCCACTACAAAAGAACCACACAAAGAAGTCTGTTTTCTTAGAGTCACATCCCTGGGTCCTTTGTCTCCAGAAGGCACTTGAAGCCTTCATCATGTCCAAGCCCGAGATGGATGAACTTTCCAGGAAGGCATTTTGCTCTTGGGTTCGTGCATACACAGCCCATCGCGGTGAGCTGAAAAGAGTATTTATGATCAAGAAACTCCACTTGGGGCACGTAGCAAAAAGCTTTGCATTGAAACAACCCCCATCCTTGGTTGGACAGTCATTCCAAAAGCAAATCGAGAAGAGAAAGATATTTGAGAAGAAAAACGGGTTGTCAAAAAAGAGAAAAGTTGCTGGCTTGTGA 1689 0.4186 MGAKKQSPGVKNEGNGTNSDVFASCSFSSLGLESNLCEQLRERLGFEVPTLVQAQAIPVILSGRHALVNAATGTGKTVAYLAPIIHHLQGYENRIQRSDGTFALVLVPTRELCLQVYEILQKLLHWFHWIVPGYIMGGENRSKEKARLRKGISILIATPGSLLDHLKNTTSFLYSNLRWIIFDEADRILKLGFGKNIEEILDLLVPTHSKMQRQNLLLSTTLNERVNHLAKMSLDNPVMIGLDESDEDSEDKYYSKVPTVGDYKVPLQLIQRYMKVPCGSRLPVLLSILKHLFEREPSQKVVLFFSTCDAVDFHYSLLSEFQFSSYSQTEGVQQVFLGCKTFRLHGNMQQEDRRTSFQAFKTEKSALLLSTDVSARGLDFPKVRFIIQYDSPGEATEYVHRVGRTARLGERGESLVFLQPVEIDYLQDLEKHGVSLTEYPVLKVLDNFPLQKNHTKKSVFLESHPWVLCLQKALEAFIMSKPEMDELSRKAFCSWVRAYTAHRGELKRVFMIKKLHLGHVAKSFALKQPPSLVGQSFQKQIEKRKIFEKKNGLSKKRKVAGL 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01690 562 CDD DEADc_DDX31 36 241 - -
Gma15g01690 562 Gene3D - 280 558 IPR027417 -
Gma15g01690 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 240 IPR027417 -
Gma15g01690 562 SMART DUF4217_3 469 534 IPR025313 -
Gma15g01690 562 CDD SF2_C_DEAD 269 418 - -
Gma15g01690 562 Gene3D - 3 242 IPR027417 -
Gma15g01690 562 Pfam Domain of unknown function (DUF4217) 471 531 IPR025313 -
Gma15g01690 562 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 181 189 IPR000629 -
Gma15g01690 562 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 284 456 IPR001650 -
Gma15g01690 562 Pfam Helicase conserved C-terminal domain 287 409 IPR001650 -
Gma15g01690 562 Pfam DEAD/DEAH box helicase 51 227 IPR011545 GO:0003676|GO:0005524
Gma15g01690 562 PANTHER RNA HELICASE 14 560 - -
Gma15g01690 562 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 14 560 - -
Gma15g01690 562 SMART ultradead3 45 255 IPR014001 -
Gma15g01690 562 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 54 IPR014014 GO:0003724
Gma15g01690 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 425 IPR027417 -
Gma15g01690 562 SMART helicmild6 312 409 IPR001650 -
Gma15g01690 562 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 240 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01690 Gma-Chr15 17819774 17825090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01690 26 441 Eukaryotic Initiation Factors Gene Family AT3G19760 26.077 1.70e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01690 K14806 - gmx:100805157 1019.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01690 15 17819774 17825090 Gma15g01690 15 17819774 17825090 ECH
Gma15g01690 15 17819774 17825090 Gma09g00661 09 7668360 7675098 GST