Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01688 ATGGCCAGCGCTCAGCTCACAGCAATAGCGTCATCGATCTCTACGGCGTCGTTTGAAGGGCTTCGACCTTCCGCTGTTCAGTTTGCTTCCACGGGCAGAATTAGAATTGGCAATCTCTCCCAAAGGTCCTTCCGGGGCTTGGTTGTCAAAGCCGCCACCGTTGTTGCCCCCAAATACACTGCGATAAAGCCTCTGGGAGATAGAGTGCTAATAAAAATTAAGGAAGCAGAGGAGAAAACTGAGGGTGGGATTTTGCTTCCATCAACTGCTCAAACGAAGCCTCAAGGGGGTGAGGTGGTTGCTGTTGGGGAAGGAAAGACAGTTGGGAAGAACAATGTAGAGATTAGTGTGAAGACTGGTGCACAAGTTGTGTATTCGAAGTATGCAGGTACTGAGGTGGACTTCAATGGTACAAAGCATCTTATTGTGAAGGATGATGACATTGTTGGTATCCTCGAAACTGATGACATCAAGGATCTTAAACCCTTGAATGATAGAGTCCTCATAAAGGTTGCTGAAGCTGAGGAAAAAACCTCTGGCGGTTTGTTGCTTACAGAGGCAACCAAGGACAAACCTTCGATTGGAACAGTGATAGCTGTTGGGCCGGGGCATCTGGACGAGGAAGGCAACAGAAAACCGTTGTCCGTGACTCCGGGGAACACAGTTTTGTACTCCAAATATGCTGGAAATGACTTCAAGGGCAAAGATGGTTCTGACTATATTACCTTGAGAGTCTCAGATGTCATGGCTGTTCTCTCCTAG 762 0.4764 MASAQLTAIASSISTASFEGLRPSAVQFASTGRIRIGNLSQRSFRGLVVKAATVVAPKYTAIKPLGDRVLIKIKEAEEKTEGGILLPSTAQTKPQGGEVVAVGEGKTVGKNNVEISVKTGAQVVYSKYAGTEVDFNGTKHLIVKDDDIVGILETDDIKDLKPLNDRVLIKVAEAEEKTSGGLLLTEATKDKPSIGTVIAVGPGHLDEEGNRKPLSVTPGNTVLYSKYAGNDFKGKDGSDYITLRVSDVMAVLS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01688 253 PANTHER GROES CHAPERONIN 1 253 - -
Gma15g01688 253 SUPERFAMILY GroES-like 159 252 IPR011032 -
Gma15g01688 253 PIRSF Cpn21 1 253 IPR017416 GO:0006457|GO:0046914|GO:1901671
Gma15g01688 253 SUPERFAMILY GroES-like 60 153 IPR011032 -
Gma15g01688 253 Hamap Co-chaperonin GroES [groES]. 159 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma15g01688 253 CDD cpn10 62 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma15g01688 253 ProSitePatterns Chaperonins cpn10 signature. 160 184 IPR018369 GO:0005524|GO:0006457
Gma15g01688 253 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma15g01688 253 Pfam Chaperonin 10 Kd subunit 62 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma15g01688 253 Pfam Chaperonin 10 Kd subunit 160 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma15g01688 253 CDD cpn10 160 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma15g01688 253 ProSitePatterns Chaperonins cpn10 signature. 62 86 IPR018369 GO:0005524|GO:0006457
Gma15g01688 253 PRINTS 10kDa chaperonin signature 62 77 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma15g01688 253 PRINTS 10kDa chaperonin signature 84 105 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma15g01688 253 PRINTS 10kDa chaperonin signature 118 130 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma15g01688 253 PRINTS 10kDa chaperonin signature 139 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma15g01688 253 Gene3D GroES chaperonin 155 253 IPR037124 GO:0006457
Gma15g01688 253 Gene3D GroES chaperonin 54 154 IPR037124 GO:0006457
Gma15g01688 253 SMART Cpn10_2 159 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma15g01688 253 SMART Cpn10_2 61 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma15g01688 253 Hamap Co-chaperonin GroES [groES]. 61 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01688 Gma-Chr15 17718545 17722311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01688 1 253 Calmodulin-binding Proteins AT5G20720 75.391 9.24e-136 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01688 K04078 - gmx:100814751 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01688 15 17718545 17722311 Gma15g01688 15 17718545 17722311 ECH
Gma15g01688 15 17718545 17722311 Gma09g00659 09 7606334 7609849 GST
Gma17g00444 17 3630853 3632978 Gma15g01688 15 17718545 17722311 PCT
Gma13g00925 13 23394197 23396495 Gma15g01688 15 17718545 17722311 PCT
Gma15g01688 15 17718545 17722311 Gma17g00444 17 3630853 3632978 PCT
Gma15g01688 15 17718545 17722311 Gma13g00925 13 23394197 23396495 PCT