Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01682 ATGGTGAAGTCGAAGAGCGTGGAGAAACCTGCGGAGGAACAACAACGAGGTGGTGTTTCAGCGTACAGAGGAGTACGGAAGAGGAAGTGGGGGAAGTACGTGTCGGAAATTAGGCTGCCCAACAGCCGTCAAAGGATTTGGTTGGGTTCCTACGACAGCGCCGAAAAGGCGGCGCGTGCATTCGACGCGGCCATGTTCTGCTTACGTGGCAGCGGTGCCAACTTTAATTTCCCGAGCGACCGGCCCAACATCGCTGGCGGGAGGAACATGACGCCCTCGCAGATTCAGATCGCCGCGGCGCGTTTCGCCAATTCGGAGCCCCGAAAGGAGTGTTCGGGTAAACCCGTGGAGTCTTTGACTTCGATTGAGGAAACGACGTCGTTTCCAGTAAATTCGGATACGGATACATCTTCTCCTCTATCAGTAGTGACGATCCAAAACGACACCGAAGTAGCAACCGGGTCGTTTCCGGGTATATTTTCGGGTTTCGGGTCGGGTAATTTCGTCCCCGAATTCTCCGATTTTCCGAGCTTCGATGATTTCGGCCACGATTTCTTCGTGCATGAGCTTCCGGGTTTCGATTACGGAGAAGAGAACTTGGATGGGTTGATAATTCAGGACTCGTTCCTGTGGAATTTCTAA 642 0.5312 MVKSKSVEKPAEEQQRGGVSAYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGANFNFPSDRPNIAGGRNMTPSQIQIAAARFANSEPRKECSGKPVESLTSIEETTSFPVNSDTDTSSPLSVVTIQNDTEVATGSFPGIFSGFGSGNFVPEFSDFPSFDDFGHDFFVHELPGFDYGEENLDGLIIQDSFLWNF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01682 213 CDD AP2 20 78 IPR001471 GO:0003700|GO:0006355
Gma15g01682 213 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Gma15g01682 213 MobiDBLite consensus disorder prediction 1 21 - -
Gma15g01682 213 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Gma15g01682 213 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 5 213 - -
Gma15g01682 213 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Gma15g01682 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 213 - -
Gma15g01682 213 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Gma15g01682 213 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Gma15g01682 213 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Gma15g01682 213 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01682 Gma-Chr15 17644046 17644938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01682 20 213 AP2-EREBP Transcription Factor Family AT1G19210 49.261 4.20e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma15g01682 AP2 4.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01682 - - gmx:100813688 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01682 15 17644046 17644938 Gma15g01682 15 17644046 17644938 ECH
Gma15g01682 15 17644046 17644938 Gma09g00658 09 7577390 7578514 GST