Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01626 ATGGGTGATGTTCTAAGCCCCTTCACCATCTCATCCCCTCCTCCACCCTCCTCTCCATCAACCAAGAGCAACAGCATGCCCATGTTGTACTACGGTCTCGTGGTGGTCGGAACCGCCGCCATAGTACTAGCCATATACAACCTCGTCCTCCTAAGACGGAGCCACACGCGCCATGCGCTGCCGTCGCAAAGTACTGGGCAAAATAGAGATATTGTACGAGTGCCCGAGATGAGAACGAGGAGCTTCGAGGACAGCCAACAAAGGAACTTGTTGTCGAGCTTCAAGTACAAGAAAGAAGTTGTGGCCAaagaagaagaacaagaagaagaagagcaagaTGATGATGAATTTGAGTGCTCCGTTTGCTTATCGGTTTATGAAGAAGGTGAAGAGGTGAGGAAGCTTCCACAGTGCAAGCACTATTTCCACGTTCTTTGCATAGACATGTGGCTTTACTCCCACTTGGATTGCCCGATTTGTAGAACGCCCGTTGATGTTGTTGGCCCTTTGTGTCCGCTGGAGAATTCACCTGATGGGATGATGGAATCCGGTGGTGGCATACCATCATCTCTCTAG 576 0.4792 MGDVLSPFTISSPPPPSSPSTKSNSMPMLYYGLVVVGTAAIVLAIYNLVLLRRSHTRHALPSQSTGQNRDIVRVPEMRTRSFEDSQQRNLLSSFKYKKEVVAKEEEQEEEEQDDDEFECSVCLSVYEEGEEVRKLPQCKHYFHVLCIDMWLYSHLDCPICRTPVDVVGPLCPLENSPDGMMESGGGIPSSL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01626 191 SUPERFAMILY RING/U-box 109 168 - -
Gma15g01626 191 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 171 IPR044675 -
Gma15g01626 191 SMART ring_2 119 160 IPR001841 -
Gma15g01626 191 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Gma15g01626 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 166 IPR013083 -
Gma15g01626 191 Pfam Ring finger domain 118 161 IPR001841 -
Gma15g01626 191 MobiDBLite consensus disorder prediction 1 23 - -
Gma15g01626 191 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01626 Gma-Chr15 16204508 16205083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01626 16 177 C3H Transcription Factor Family AT1G04360 32.768 2.17e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01626 - - gmx:102668279 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01626 15 16204508 16205083 Gma15g01626 15 16204508 16205083 ECH
Gma17g00479 17 3941263 3947833 Gma15g01626 15 16204508 16205083 PCT
Gma13g00887 13 23079605 23080948 Gma15g01626 15 16204508 16205083 PCT
Gma15g01626 15 16204508 16205083 Gma17g00479 17 3941263 3947833 PCT
Gma15g01626 15 16204508 16205083 Gma13g00887 13 23079605 23080948 PCT