Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01623 ATGAAGCAATTTCTCTTTTTGAATCTTCCTGACACCGAGATCAATTGTTCACAAGTTGATTGCAATCACTCAATGGCTCATTCTTCTTATCCCTACGGCGATCCAATTCTTGCTTATGGACCACAAGCTATTagtcatccccaaatggtaccccagatgctgggactagCATCCACCAGAGTGGCATTACCACTTGATCTTGCTGAAGATGGACCGATTTATGTCAACGCGAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCTGGGGGTCGATTTCTGAGTACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACCGGTGCACATTCTGGTTCTGACCCTACCAACATATATCAGAAAGAACATCCATTAGAGGTGGAAAGTCATTCCTCAAAAGATGGAGATAATGCATCATTCATAACAACCTACTCCGACCGGCCATGTTTATCTGGCAACAACCTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGAGTGGAGCACCACAGTGCAGTGGGGGACTCACCTTTGGCGGAGCAAAGCAACGCACTTCAGTTGTCCGGTGA 687 0.4294 MKQFLFLNLPDTEINCSQVDCNHSMAHSSYPYGDPILAYGPQAISHPQMVPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQLAQSNAEFVTGAHSGSDPTNIYQKEHPLEVESHSSKDGDNASFITTYSDRPCLSGNNLNFRQQECMFLGNSANMSGAPQCSGGLTFGGAKQRTSVVR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01623 228 ProSiteProfiles NF-YA/HAP2 family profile. 69 129 IPR001289 GO:0003700|GO:0006355
Gma15g01623 228 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 72 126 IPR001289 GO:0003700|GO:0006355
Gma15g01623 228 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 217 IPR001289 GO:0003700|GO:0006355
Gma15g01623 228 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 217 - -
Gma15g01623 228 SMART cbf3 68 129 IPR001289 GO:0003700|GO:0006355
Gma15g01623 228 PRINTS CCAAT-binding transcription factor subunit B signature 72 94 IPR001289 GO:0003700|GO:0006355
Gma15g01623 228 PRINTS CCAAT-binding transcription factor subunit B signature 103 126 IPR001289 GO:0003700|GO:0006355
Gma15g01623 228 ProSitePatterns NF-YA/HAP2 subunit signature. 74 94 IPR018362 GO:0003677|GO:0016602
Gma15g01623 228 Gene3D - 69 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01623 Gma-Chr15 16079825 16086032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01623 24 135 CCAAT-HAP2 Transcription Factor Family AT1G17590 61.345 3.19e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gma15g01623 CBFB_NFYA 3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01623 K08064 - gmx:100793856 431.024