Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01606 ATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATGATACCAAGATGAATGAGTTGCTTACATCTGATGGACAGGATTTTTTCACATCTTATGATGAGGTTTATGACAGTTTTGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGGTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCAAGGGACTTGATGTTATACAACAGGCCCAGTCTGGAACTGGGAAGACAGCAACTTTCTGCTCTGGAATTCTGCAGCAACTTGACTATAGTGTGACTGAATGCCAAGCCTTGGTTTTAGCACCAACTAGGGAGCTTGCTCAGCAAATTGAAAAGGTTATGCGAGCACTTGGAGATTATCTTGGTGTGAAGGTGCACGCATGTGTGGGAGGTACCAGTGTTCGTGAAGACCAACGCATTCTATCGAGTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTATTTGATATGCTGCGCAGACAGTCACTTCGGCCAGACTACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTTAAAGATCAGATCTATGATATATTCCAGTTGCTTCCATCTAAGATTCAAGTGGGAGTTTTCTCTGCTACAATGCCTCCTGAGGCACTTGAGATCACAAGGAagttcatgaacaaacctgtgaggatccttgtgaagcgtgatgagctcaccttggagggtatcaagcaatttcatgtcaatgttgagaaagaggaatggaagcttgacacactatgtgatctttatgagacattggcaattactcagagtgtcatttttgtgaacaccagaagaaaggTTGATTGGCTGACTGACAAGATGCGAAGCCGAGACCACACAGTCTCAGCAACCCATGGAGACATGGACCAAAATACCAGGGACATTATTATGCGTGAATTCCGTTCTGGGTCGTCCCGTGTTTTAATAACTACTGATCTTTTGGCCCGTGGTATTGATGTCCAGCAAGTGTCTCTAGTTATAAATTATGATCTCCCAACACAGCCTGAGAACTATCTCCATCGTATTGGTCGTAGTGGAAGGAGCTGCCTTCAAATGTTGCTGAACTCCTTTGATGAGTTTTTTTGTTCCATCATATTAGAGGAAAGTTGGTTTCTGAGGATTGGATGA 1203 0.3766 MAGLAPEGSQFDARQYDTKMNELLTSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSVTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRSCLQMLLNSFDEFFCSIILEESWFLRIG 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01606 400 CDD SF2_C_DEAD 253 372 - -
Gma15g01606 400 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Gma15g01606 400 PANTHER BNAA02G16100D PROTEIN 6 373 - -
Gma15g01606 400 SMART ultradead3 59 256 IPR014001 -
Gma15g01606 400 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 400 IPR001650 -
Gma15g01606 400 Gene3D - 30 248 IPR027417 -
Gma15g01606 400 Pfam Helicase conserved C-terminal domain 266 372 IPR001650 -
Gma15g01606 400 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 373 - -
Gma15g01606 400 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Gma15g01606 400 Gene3D - 249 390 IPR027417 -
Gma15g01606 400 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Gma15g01606 400 CDD DEADc_EIF4A 44 242 - -
Gma15g01606 400 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Gma15g01606 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 373 IPR027417 -
Gma15g01606 400 SMART helicmild6 293 374 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01606 Gma-Chr15 15849122 15851605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01606 1 372 Eukaryotic Initiation Factors Gene Family AT3G13920 92.493 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01606 K03257 - gmx:100786735 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01606 15 15849122 15851605 Gma09g00593 09 6538416 6542381 GST
Gma17g00502 17 4124059 4134743 Gma15g01606 15 15849122 15851605 PCT
Gma13g00862 13 22851572 22853809 Gma15g01606 15 15849122 15851605 PCT
Gma15g01606 15 15849122 15851605 Gma17g00502 17 4124059 4134743 PCT
Gma15g01606 15 15849122 15851605 Gma13g00862 13 22851572 22853809 PCT