Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01595 ATGTTAAGTAGTAAGTGCTTCTTTCCCACTAGGTACTTTTCAAACTCCCTGGAAGACCAACACAATTATATTTTTGCAACACCCACATGCAGTCGTTTGAGCTTCTTGGATGGTATCTACAATGTAAGGAACAACCAAGCAAGCTCTAGTTTGGGGAGTGTGCAGGCACAACAGCTTTTCAGTCAGTTCCGGACTTTGACATTTGATGTCAATGATGACCGTGTTCCTGGACTAGCTTTTAGGAATCAACGACCCTACCTAGAGCTCCAACAATTGGAACTTCTCAGATTAGCATCCACAGAAATACAAATACAATTCTTTCAGGAGGCAAGGATTAAGACTGCTGTTTTCATGGGGTGTAACAAGGGAGAAATTGAGCTTGGTTTCTTAAATATGTCCCAAGTTGACATTCAAACAGCACTTAGGAGTTTGTTTCCTGAAGATTTTTCCACTAGAGTACAGTCCCAGCAAATTGATCAAAACCCTCCTACATCATCTTCATCTTCTCTGAGATCAATATCCACAGGTAGCCCTGAATACTCATCACTTATATTCAGTATTCCAGGCACATCTCAACCCCACTTTCCACCTGAGACTCTTGGAGCATCATCATCAAGAGTAGAGCCAACAATGCAGCCAGTGCCAAATAGTCCTCACCAACGAGCCATTGATATTCAAGCATTGACAGAAGTCCCTTCTCTAACCCAATTCCCCACACCAGAAACTGAACATGATGCAATCATGAGAGCAATCCTCCATGTTATATCTCCAACAACTTCTTATCATCATGAGCAGCAGCACCACCAAAACTTGCCTTATAGTAATAATTTTCTTCCTGTGGTGCGTCCTGATGCTAGTGCTTTCCAGAGGTATAGACAAGACTTAGGCTCCAACATGGCCTCAAATTTCAGAAGGCAAAGCCTCATGAAGAGGTCTCTTGTGTTCTTTAGAAACATGAACTTTATGAGAATGAGAGAACGCGTTCAAGCAACGTCTCGTCCCACCAATACTCAGCTTCATCATATGATATCAGAGAGGAGAAGGCGTGAGAAGCTAAACGAGAATTTTCAAGCACTTAGAGCACTTCTTCCTCCGGGAACAAAGAAAGACAAAGCGTCTATACTAATAGCAGCAAAGGAGACATTGAGGTCTTTGATGGCTGAAGTTGATAAACTAAGCAACAGAAATCAGGGATTGACGTCACTTTTGCCAGCCAAAGAATCTACAGCTGAAGAAACCAAGGTAGCTAGTTTATCACCAAATGAAAGATTAAGTGTCAGAATTTCACATGTACCCGAATCAAGCACATCAGAAGAGAGAATGGTGGAGTTGCAAGTGAATGTGAGAGGACAAGTTTCTCAAACTGATTTATTAATCCGGTTATTGAAATTCTTAAAACTGGCTCACCACGTGAGTTTGGTTTCCATGGACGCAAACACTCACATTGCAGAAGGGAACAATGCACTTCATCAACTAACCTTCAGATTGAGGATTATTCAGGGAAGTGAATGGGACGAGTCTGCCTTCGAGGAAGCAGTAAGAAGAGTAGTTGCTGACTTGGCACAGTACCAAATGGACCAATAA 1584 0.4211 MLSSKCFFPTRYFSNSLEDQHNYIFATPTCSRLSFLDGIYNVRNNQASSSLGSVQAQQLFSQFRTLTFDVNDDRVPGLAFRNQRPYLELQQLELLRLASTEIQIQFFQEARIKTAVFMGCNKGEIELGFLNMSQVDIQTALRSLFPEDFSTRVQSQQIDQNPPTSSSSSLRSISTGSPEYSSLIFSIPGTSQPHFPPETLGASSSRVEPTMQPVPNSPHQRAIDIQALTEVPSLTQFPTPETEHDAIMRAILHVISPTTSYHHEQQHHQNLPYSNNFLPVVRPDASAFQRYRQDLGSNMASNFRRQSLMKRSLVFFRNMNFMRMRERVQATSRPTNTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILIAAKETLRSLMAEVDKLSNRNQGLTSLLPAKESTAEETKVASLSPNERLSVRISHVPESSTSEERMVELQVNVRGQVSQTDLLIRLLKFLKLAHHVSLVSMDANTHIAEGNNALHQLTFRLRIIQGSEWDESAFEEAVRRVVADLAQYQMDQ 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01595 527 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Gma15g01595 527 Gene3D - 335 410 IPR036638 GO:0046983
Gma15g01595 527 MobiDBLite consensus disorder prediction 194 218 - -
Gma15g01595 527 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 400 IPR036638 GO:0046983
Gma15g01595 527 CDD bHLH_AtbHLH_like 341 393 IPR045239 -
Gma15g01595 527 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 29 520 - -
Gma15g01595 527 SMART finulus 342 391 IPR011598 GO:0046983
Gma15g01595 527 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 29 520 IPR044658 -
Gma15g01595 527 Coils Coil 342 362 - -
Gma15g01595 527 Pfam Helix-loop-helix DNA-binding domain 340 385 IPR011598 GO:0046983
Gma15g01595 527 MobiDBLite consensus disorder prediction 152 175 - -
Gma15g01595 527 Coils Coil 375 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01595 Gma-Chr15 15661815 15667235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01595 22 521 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 39.360 5.01e-87 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma15g01595 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01595 - - gmx:100807098 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01595 15 15661815 15667235 Gma15g01595 15 15661815 15667235 ECH
Gma15g01595 15 15661815 15667235 Gma09g00582 09 6352660 6357432 GST
Gma17g00510 17 4194557 4197880 Gma15g01595 15 15661815 15667235 PCT
Gma13g00853 13 22781926 22788734 Gma15g01595 15 15661815 15667235 PCT
Gma15g01595 15 15661815 15667235 Gma17g00510 17 4194557 4197880 PCT
Gma15g01595 15 15661815 15667235 Gma13g00853 13 22781926 22788734 PCT