Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01579 ATGATACCAACTTATCGTTACTCAGTGTCTTCACCTATGCCTATAGATCTTAATGAAGATCACACCCACCACCTCTTCAGTACAAATCATCAAGCCTCTTGTTCATCTTCTTCGCTATCTTATTCTATTCTCTTCAACCCGGATCAAGATCAGGGAGGATCTTGTAGCGACTGGAAATCCAAGCATTTGCAAAGTGATGAAGAGGCCCAGAAGATTGTTCCTTCTAGTGGATTATCCGAAAAGGATGAAAACAAAAGTGATCTCAAGCTGAGGGTTTGGAAGAAAGAAGATAAGTGTGAAAATTTTCAAGGTGAAGATAATTCAACCAAGTGGATGCCTTTAAAGATGAGAATGATGCGGAGGCTGATGGTGTCAGATCAAACGGGTTCTGATGATACAGAAGGCATGATCTCTAACTCTCAGAAGATCAAGTATGAAGAGAAAAACTCACCACTGTCCCCTCTAGGAACTGATGATAGTAACTACAATTCTTCTTCAAACCACAGCAATATCACTGTTAGGGTTTGTTCTGATTGCCACACCACTAAGACCCCTCTCTGGAGAAGTGGACCAAAAGGTCCAAAGTCACTTTGCAATGCTTGTGGAATTCGACAAAGGAAGGTACGACGTGCCATTGCCGCCGCTGCAACGTCAAACGGAACAAATCCGGTGGAGGCTGAGAAATCTCAAGTGAAGAAGGGAAACACGTTGCATAGCAAAGGGATGAAGTCCAAAACTGAGGGTGCACAACAGATGAAAAAGAATCGTAAACTCGGAGCCAGGTATAGAAAGAGGTTTGGTGCTTTTGAGGATTTGACAGTGAGATTGAGTAAGAACTTCGCTCTCCAGCAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCAATCTTGCTCATGGCTTTATCTTATGGCCTTCTTCATGGCTTTCCCACGGATCGTTATATCACTTAG 948 0.4325 MIPTYRYSVSSPMPIDLNEDHTHHLFSTNHQASCSSSSLSYSILFNPDQDQGGSCSDWKSKHLQSDEEAQKIVPSSGLSEKDENKSDLKLRVWKKEDKCENFQGEDNSTKWMPLKMRMMRRLMVSDQTGSDDTEGMISNSQKIKYEEKNSPLSPLGTDDSNYNSSSNHSNITVRVCSDCHTTKTPLWRSGPKGPKSLCNACGIRQRKVRRAIAAAATSNGTNPVEAEKSQVKKGNTLHSKGMKSKTEGAQQMKKNRKLGARYRKRFGAFEDLTVRLSKNFALQQVFPQDEKEAAILLMALSYGLLHGFPTDRYIT 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01579 315 ProSitePatterns GATA-type zinc finger domain. 176 201 IPR000679 GO:0006355|GO:0043565
Gma15g01579 315 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 212 - -
Gma15g01579 315 MobiDBLite consensus disorder prediction 219 246 - -
Gma15g01579 315 SMART GATA_3 170 222 IPR000679 GO:0006355|GO:0043565
Gma15g01579 315 Gene3D - 172 265 IPR013088 GO:0006355|GO:0008270
Gma15g01579 315 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 307 - -
Gma15g01579 315 MobiDBLite consensus disorder prediction 219 250 - -
Gma15g01579 315 MobiDBLite consensus disorder prediction 144 166 - -
Gma15g01579 315 MobiDBLite consensus disorder prediction 65 85 - -
Gma15g01579 315 ProSiteProfiles GATA-type zinc finger domain profile. 174 206 IPR000679 GO:0006355|GO:0043565
Gma15g01579 315 Pfam GATA zinc finger 176 209 IPR000679 GO:0006355|GO:0043565
Gma15g01579 315 CDD ZnF_GATA 175 215 IPR000679 GO:0006355|GO:0043565
Gma15g01579 315 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01579 Gma-Chr15 15320592 15322311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01579 15 307 C2C2-Gata Transcription Factor Family AT4G26150 30.790 3.03e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma15g01579 GATA 4.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01579 - - gmx:100780875 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01579 15 15320592 15322311 Gma15g01579 15 15320592 15322311 ECH
Gma15g01579 15 15320592 15322311 Gma09g00570 09 6111900 6114210 GST
Gma17g00521 17 4290842 4292937 Gma15g01579 15 15320592 15322311 PCT
Gma13g00838 13 22644952 22647043 Gma15g01579 15 15320592 15322311 PCT
Gma15g01579 15 15320592 15322311 Gma17g00521 17 4290842 4292937 PCT
Gma15g01579 15 15320592 15322311 Gma13g00838 13 22644952 22647043 PCT