Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01572 ATGGAAGATGATGAGGCATGCATCACGAGTCTGAGCCTTGGACTTGGAATAATGGGAGGGCATGCTCCAAAGAAGGAGAATAAGCAGAAAGTTCCTTGCTTGGACCTATCTTTTGAGCTTTGTCCAAAAGGGGAAGAAGAAGAAGAAGAAGCCATTGACGTGGATCAACAACAACATGGTGATAAGGCCAAAGGGTTGTTGTGTTTGAAGCACCCAAATGATGAAACAAGCCCTGATAGCAACAATAGCAATAACGGCAGCAGAAAGAAACTGAAGCTCACAAAGGAGCAATCAGCCACCCTTGAAGATATTTTCAAGCTGCATAGCTCTCTTAACCCCGCACAGAAACAGGCACTTGCTGAACAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGCTGAAGCAAACAGAGGTGGATTGCGAGTTCCTGAAGAAATGTTGTGAGAAACTGACCGATGAGAATCTAAGGCTGAAGAAGGAGTTGCAAGAGCTGCGTGCACAAAAGATTGGATCAACACCACTGTACATTCAACTCTCCAAGGCCACAACCTTGACCATTTGTTCATCGTGCGAGAAACTGTTGAAGCCCAATGAAGGGAACAAAGGAGCCATTAACAAATTGCAGAACAGTATAGAGTTAGGGGGTATCTAG 681 0.442 MEDDEACITSLSLGLGIMGGHAPKKENKQKVPCLDLSFELCPKGEEEEEEAIDVDQQQHGDKAKGLLCLKHPNDETSPDSNNSNNGSRKKLKLTKEQSATLEDIFKLHSSLNPAQKQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQKIGSTPLYIQLSKATTLTICSSCEKLLKPNEGNKGAINKLQNSIELGGI 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01572 226 SUPERFAMILY Homeodomain-like 75 145 IPR009057 -
Gma15g01572 226 Gene3D - 67 143 - -
Gma15g01572 226 PANTHER - 64 214 - -
Gma15g01572 226 MobiDBLite consensus disorder prediction 68 92 - -
Gma15g01572 226 SMART halz 144 187 IPR003106 GO:0006355|GO:0043565
Gma15g01572 226 SMART HOX_1 86 148 IPR001356 GO:0003677
Gma15g01572 226 CDD homeodomain 88 145 IPR001356 GO:0003677
Gma15g01572 226 Pfam Homeobox associated leucine zipper 144 177 IPR003106 GO:0006355|GO:0043565
Gma15g01572 226 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Gma15g01572 226 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 64 214 - -
Gma15g01572 226 Coils Coil 143 177 - -
Gma15g01572 226 Pfam Homeodomain 88 142 IPR001356 GO:0003677
Gma15g01572 226 MobiDBLite consensus disorder prediction 74 88 - -
Gma15g01572 226 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01572 Gma-Chr15 15220272 15221840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01572 87 203 Homeobox Transcription Factor Family AT4G37790 75.214 1.83e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma15g01572 Homeodomain 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01572 K09338 - gmx:100778922 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01572 15 15220272 15221840 Gma09g00566 09 6060050 6061297 GST
Gma17g00532 17 4365908 4367271 Gma15g01572 15 15220272 15221840 PCT
Gma13g00828 13 22575832 22577358 Gma15g01572 15 15220272 15221840 PCT
Gma15g01572 15 15220272 15221840 Gma17g00532 17 4365908 4367271 PCT
Gma15g01572 15 15220272 15221840 Gma13g00828 13 22575832 22577358 PCT