Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01547 ATGCGGGATGTGAATAATTTAAATAACAAAGGATCTGGAAAATCTAGTTACTCACAGGAACAGACTAAGTCCAAGCTAGTTTCCTCGAAATTCAAAACAAGTAGCACAAAACGCCAAGAGAAGAAACACAAAGTGAGGTCAAAATCTCATAAACACAGAGCTGGTACAAGCAAATCAAAGAAGACAGTTACACATTCTTCTGTCGAGGCACCACTTGAGGATTCTTCAAATAAAAAAGTGATTATTAGAAAATATCGGCATAAAACTGATGGGAAATCTTCACAGATGCTGTCTTCAACAAAGCTAGAAGGAGGAAAAAATTCTCATAGTTCTGGAATAGAGGGGAATGATGTTGATGGGGAGGCAAAGATTAAAAAACGTAAGAGAAGAAAGAAGAAAAGACAAAGGAATAACATAGATGTTGATGATGCTTCACGCTTGCGAAGGAGAACAAGATACCTCTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGGGAAAAGATTAGGCCAGAAAAGGAGCTACTACGAGCAAAAAAGCAGATTTTAAAATGTAAACTTAGTATTCGCGATGCCATACACCAGCTGGATTCTCTTAGTTCTGTGGGTAGCATTGAAGATTCTGCCATTGCTCCAGATGGATCTGTTTATCATGAAAATATATTCTGTGCCAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGCACTTGCAATCGTGCTTTTCACCAGAGATGTCTCAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATACTAGAGGCAACAAATGCCCATCTTGGGACTCAATTCTCCCTAGACAGTACTTGGCAGGATGTATTCAAGGAAGAGGCTGCTATGCCTGATGGTGACATTGCATTACTAAATCCTGAAGAAGAATGGCCATCAGACGATCCTGAAGATGATGATTACAATCCAGAGAGGAAAGAAGACAACCACAACTTTGACACAGAAGGAGCTGATGAAAATGCATCCAATGATTCAACCAGTTGTTCCAGTCTGTTGTCTTTGAATGGCGAATGTCCTCCAGTAGATGAAGGCATCTGTCATGAATATTATTCTGTTAATAGCTGCTTAGATTCTGATGAATCTGGGGAAATAGCATGTGGTCCTAGGCAGCGTAAAGCTGTTGACTACAAGAAACTCTATGATGAAATGTATGGGAAGGATGCTCCACCTTGTGAACAAATGAGTGAAGATGAAGATTGGGGTCCTGGCAAAAGAAAGAGAAGAGAAAAGGAGTCAGATGCTGTCAATACTCTTATGACTCTGCATGAAAGTGAGAATAAACATTCTGATAATGAGAAAAATGATAGAACGAGAGAAGGTTCTTCAGGCATACAAATAAGAAGATCTTGTTTCAGGATTCCGCTTGATGCAGTTGAGAAACTTCGCCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAGATCTGTGAAGGACAGCCTTTCGAAAGAGTTGGGACTAGATCCTGAAAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTTAAAACCAGAAGGTATCAATCAGAAGGAGAACGGCTTCAGAGTTTCACTTCTAAGATCACAAAGGATTCTATATCTCAAAACGAGGAGAAAGATGAGCTTTTGAAATCGAAGGTCTCCAAAATTACTGTGATTCATTCCAAGAAGGATGGTAAAAACATCACAGGCAAAGAGAAAAATAAATTATCTAACATTCTTTTGAAGAAAAGGCAACCAAAAATATCTCCACCTTTAGCAAGAGAAAATGGCAACAAGGACTCTATGGAGATCAGTAATGATGTTAAGTTGAAGAAACTGTTGAAAAAAAGGAAAAGAGGGGTAAATATTATATTTGAAGGAGACTCTCAGGCAGCAGAGTTGGAATTTGAAAGACTCGGCAAAGTAAAGATGAAACTAGATAGCATGAAGCAAAAATTAAATGAAGTTCAAAATTGCAGAGCAAAGGGTTCAAATGAACTCTATTTAAATGAACCCTCTATTATATATGTACCCACAGCCCAATTAAGGGAAAAGATTGAATAA 2154 0.383 MRDVNNLNNKGSGKSSYSQEQTKSKLVSSKFKTSSTKRQEKKHKVRSKSHKHRAGTSKSKKTVTHSSVEAPLEDSSNKKVIIRKYRHKTDGKSSQMLSSTKLEGGKNSHSSGIEGNDVDGEAKIKKRKRRKKKRQRNNIDVDDASRLRRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELLRAKKQILKCKLSIRDAIHQLDSLSSVGSIEDSAIAPDGSVYHENIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTQFSLDSTWQDVFKEEAAMPDGDIALLNPEEEWPSDDPEDDDYNPERKEDNHNFDTEGADENASNDSTSCSSLLSLNGECPPVDEGICHEYYSVNSCLDSDESGEIACGPRQRKAVDYKKLYDEMYGKDAPPCEQMSEDEDWGPGKRKRREKESDAVNTLMTLHESENKHSDNEKNDRTREGSSGIQIRRSCFRIPLDAVEKLRQVFAENELPPRSVKDSLSKELGLDPEKVSKWFKNARYLALKTRRYQSEGERLQSFTSKITKDSISQNEEKDELLKSKVSKITVIHSKKDGKNITGKEKNKLSNILLKKRQPKISPPLARENGNKDSMEISNDVKLKKLLKKRKRGVNIIFEGDSQAAELEFERLGKVKMKLDSMKQKLNEVQNCRAKGSNELYLNEPSIIYVPTAQLREKIE 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01547 717 MobiDBLite consensus disorder prediction 346 360 - -
Gma15g01547 717 Pfam Homeodomain 500 542 IPR001356 GO:0003677
Gma15g01547 717 MobiDBLite consensus disorder prediction 466 485 - -
Gma15g01547 717 MobiDBLite consensus disorder prediction 1 33 - -
Gma15g01547 717 SMART PHD_3 234 287 IPR001965 -
Gma15g01547 717 SMART HOX_1 489 551 IPR001356 GO:0003677
Gma15g01547 717 CDD homeodomain 495 542 IPR001356 GO:0003677
Gma15g01547 717 ProSiteProfiles Zinc finger PHD-type profile. 232 289 IPR019787 -
Gma15g01547 717 ProSiteProfiles 'Homeobox' domain profile. 487 547 IPR001356 GO:0003677
Gma15g01547 717 PANTHER POLYCOMB PROTEIN PCL 8 693 - -
Gma15g01547 717 SUPERFAMILY Homeodomain-like 490 552 IPR009057 -
Gma15g01547 717 Pfam PHD-finger 234 289 IPR019787 -
Gma15g01547 717 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 8 693 - -
Gma15g01547 717 MobiDBLite consensus disorder prediction 1 143 - -
Gma15g01547 717 ProSitePatterns Zinc finger PHD-type signature. 235 286 IPR019786 -
Gma15g01547 717 MobiDBLite consensus disorder prediction 430 459 - -
Gma15g01547 717 MobiDBLite consensus disorder prediction 328 372 - -
Gma15g01547 717 MobiDBLite consensus disorder prediction 331 345 - -
Gma15g01547 717 CDD PHD_PRHA_like 234 286 IPR045876 -
Gma15g01547 717 MobiDBLite consensus disorder prediction 92 114 - -
Gma15g01547 717 Gene3D - 489 555 - -
Gma15g01547 717 SUPERFAMILY FYVE/PHD zinc finger 226 291 IPR011011 -
Gma15g01547 717 MobiDBLite consensus disorder prediction 36 59 - -
Gma15g01547 717 MobiDBLite consensus disorder prediction 430 485 - -
Gma15g01547 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 283 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01547 Gma-Chr15 14630280 14650538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01547 137 552 Homeobox Transcription Factor Family AT4G29940 58.548 1.97e-158 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Gma15g01547 PHD 8.9e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01547 - - gmx:100787118 1381.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01547 15 14630280 14650538 Gma15g01547 15 14630280 14650538 ECH
Gma15g01547 15 14630280 14650538 Gma09g00541 09 5650464 5657183 GST
Gma17g00559 17 4598883 4603247 Gma15g01547 15 14630280 14650538 PCT
Gma13g00807 13 22370006 22374464 Gma15g01547 15 14630280 14650538 PCT
Gma15g01547 15 14630280 14650538 Gma17g00559 17 4598883 4603247 PCT
Gma15g01547 15 14630280 14650538 Gma13g00807 13 22370006 22374464 PCT