Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01466 ATGGCTTCTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAGTTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGCTCTCGTGCTGAAAACAGAGCACGACCCATCAGAGCTTCGGTTGGTGCTCCCCCATTTCCCCTGTTTCAGCCTCCCCAAGTTGAAGAGACAACATCGTCTGAGTTGGAGCCCGCTGATCCTGATTTCTACAAGATTGGTTATGTCCGAAGTATGCGAGCTTATGGAGTTCAGTTTAAAGAAGGGCCAGATGGTTTTGGAGTGTATGCTTCCAAAGATGTAGAGCCTCTTCGCCGAGCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACCATAAGCAAGAAGCTCCCGTGGATGTTTTTCCCTGATATAATTCCCTTGGATCATCCAATATTTGATATTATCAACTCAACAAATCCAGAGACAGATTGGGACCTAAGGTTAGCATGCCTTCTCTTATATGCATTTGACTGTGAAGGCAACTTTTGGCAATTGTATGGCGACTTCTTACCGAGTGCAGATGAGTGCACTAGCTTACTTCTTGCTTCAGAGGAGGAACTTTTGGAGCTGCAGGATCCTGATCTTGCTTCCACTATTAGAAAACAGCAACAACGATCCTTAGAATTCTGGGAGAATAACTGGCACAGTGATGTACCCCTTAAAATAAAGCGTCTTGCGCGTGATCCTCAAAGGTTTGCTTGGGCAGTAGGTATTGCACAGTCACGATGTATTAACATGCAAACGAGAATTGGTGCTCTAAATCAAGAAGCAAATATGCTGATTCCTTATGCTGATATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGTTTTAAGGACAGGATGCTTGAGGTTCTTATAAATGCTGGACAGCAGATTAGGAAGGGAGATGAGATGACAGTTAATTACATGAGTGCTCAGAAGAATGACATGTTCATGCAAAGATATGGATTTTCATCACCCGTGAATCCTTGGGACAAGATCAAATTCTCAGGCAATGCGCGTATTCATTTGGATTCCTTCTTGTCAATCTTCAATATATCTGGCCTTCCTGAAGAGTATTACCATAATAATTGTCTGTCAAAAGCCGGAGATAGTTTTGTTGATGGAGCAGTCATAGCTGCAGCACGAACATTGCCAACTTGGTCAGATGGGGATGTGCCTCCAATCCCTAGCATGGAAAGAAAGGCTGCGAAGGAGTTGCAAGATGAATGTCAAAAGATGCTTGCAGAATTTGCTACAACCTCTAAGCAAGACCAGAAATTGCTAGATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAAGTATAGATTGCACAGGAAATTGTTCATGGAGAAAGTTTTCCAAGCATTGGAGATGTATCAAGAGCAAATACTGTTCTGA 1452 0.4298 MASSIHLYQPTNTLFSKTQFKGSRRGFLWKPSYSFGSRAENRARPIRASVGAPPFPLFQPPQVEETTSSELEPADPDFYKIGYVRSMRAYGVQFKEGPDGFGVYASKDVEPLRRARVIMEIPLELMLTISKKLPWMFFPDIIPLDHPIFDIINSTNPETDWDLRLACLLLYAFDCEGNFWQLYGDFLPSADECTSLLLASEEELLELQDPDLASTIRKQQQRSLEFWENNWHSDVPLKIKRLARDPQRFAWAVGIAQSRCINMQTRIGALNQEANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQQIRKGDEMTVNYMSAQKNDMFMQRYGFSSPVNPWDKIKFSGNARIHLDSFLSIFNISGLPEEYYHNNCLSKAGDSFVDGAVIAAARTLPTWSDGDVPPIPSMERKAAKELQDECQKMLAEFATTSKQDQKLLDSMADATRTLEAAIKYRLHRKLFMEKVFQALEMYQEQILF 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01466 483 Pfam SET domain 100 323 IPR001214 GO:0005515
Gma15g01466 483 SUPERFAMILY SET domain 99 339 IPR046341 -
Gma15g01466 483 Gene3D - 373 481 IPR036464 -
Gma15g01466 483 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 51 475 - -
Gma15g01466 483 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 335 476 IPR036464 -
Gma15g01466 483 Coils Coil 418 438 - -
Gma15g01466 483 Gene3D set domain protein methyltransferase, domain 1 84 338 - -
Gma15g01466 483 CDD SET_LSMT 91 338 - -
Gma15g01466 483 Pfam Rubisco LSMT substrate-binding 412 464 IPR015353 -
Gma15g01466 483 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 51 475 - -
Gma15g01466 483 ProSiteProfiles SET domain profile. 79 324 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01466 Gma-Chr15 13292113 13299027 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma15g01466 SET 2.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01466 - - gmx:100790985 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01466 15 13292113 13299027 Gma09g00455 09 4410167 4418152 GST