Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01350 ATGTCGCTGAGGCCGAATGCTAGAACCGAGGTTCGCCGCAACCGCTACAAGGTGGCGGTGGACGCCGACGAGGGTCGCCGGCGGAGGGAGGACAACATGGTTGAGATCCGCAAGAGCAAGCGCGAAGAGAGCCTCCAGAAGAAGCGCCGCGAAGGCCTCCAAGCTCAGCAGCAGTTCCCCACTCCTCTCCAAGCCTCCTCCATTGTCGAGAAAAAGTTAGAGAGTCTTCCTGCGATGGTAGCTGGAGTGTGGTCGGATGATAACAGCCAGCAATTGGAAGCGACCACGCAGTTCCGGAAACTGCTTTCGATTGAGCGCAGTCCTCCGATTGAGGAAGTTATTCAAGCTGGGGTTGTGCCTCGGTTTGTGGAGTTTCTTGTTAGGGAGGATTTTCCTCAACTACAGTTTGAGGCTGCGTGGGCTCTCACGAACATTGCATCTGGAACTTCTGAGAATACCAAGGTGGTGATTGATCATGGGGCGGTGCCGATATTTGTCAAACTACTTAGTTCGCCCAGTGATGATGTTCGGGAGCAGGCAGTATGGGCGTTGGGAAATGTTGCTGGTGACTCCCCAAGGTGTCGTGATCTTGTTCTTAGTCACGGTGCCCTGATCCCATTGTTGGCCCAGTTGAATGAGCATGCAAAACTTTCCATGTTGAGAAACGCCACATGGACCCTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCATTTGAGCAGGTAGTGAGGGCAGCGCTTCCTGCTCTAGAACGATTGGTTTTTTCCAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCGCTATCATATCTTTCCGATGGAACAAATGACAAAATCCAAGCCGTTATTGAGGCTGGTGTTTGTCCCAGACTGGTGCAGCTCCTTCTGCACCCATCCCCTTCAGTGCTGATTCCTGCTCTTCGCACAGTTGGAAATATTGTGACGGGAGATGATATGCAGACTCAGACTATCATCAATCATGGTGCGCTCCCATGCCTCTTGAGCCTGTTGACACACAATCATAAAAAAAGTATCAAGAAAGAAGCATGCTGGACCATATCAAACATTACGGCTGGAAACAGAGATCAGATACAGGCTGTTATTGAAGCTGGTCTGATTGCCCCCCTTGTCAATCTTCTTCAAAATGCTGAATTTGACATAAAAAAAGAAGCTGCTTGGGCAATCTCAAATGCTACATCTGGCGGTACCCATGAGCAGATCAAGTATTTGGTGAGCCAGGGTTGCATCAAGCCTCTCTGTGATCTGCTTGTTTGCCCCGACCCAAGAATTGTCACTGTCTGTTTAGAAGGTCTTGAGAATATTCTGAAGGTTGGGGAAGCTGAGAAGAGCTTGGGTAATACTGGAGATGTCAACTTGCTGTTAAAATTCTTGAGACATACTGGTTGGAAGACGATGATGAGACACTACCTGCAGGCGATGGTGCTCAACCCGGTTTTAATTTTGGAAACAATGATCTTCCGGTTCCATCTGGTGGATTCAACTTTAGTTGAAGACTGTTGTGTGGGAACCTGGTTGGATGGAGCAGGGTTGATGCTAGGGTGA 1566 0.4949 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFPTPLQASSIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLLLKFLRHTGWKTMMRHYLQAMVLNPVLILETMIFRFHLVDSTLVEDCCVGTWLDGAGLMLG 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01350 521 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 245 287 IPR000225 GO:0005515
Gma15g01350 521 PANTHER IMPORTIN ALPHA 2 464 - -
Gma15g01350 521 Pfam Armadillo/beta-catenin-like repeat 361 400 IPR000225 GO:0005515
Gma15g01350 521 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Gma15g01350 521 Pfam Armadillo/beta-catenin-like repeat 277 315 IPR000225 GO:0005515
Gma15g01350 521 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Gma15g01350 521 Pfam Armadillo/beta-catenin-like repeat 405 442 IPR000225 GO:0005515
Gma15g01350 521 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Gma15g01350 521 Pfam Armadillo/beta-catenin-like repeat 319 359 IPR000225 GO:0005515
Gma15g01350 521 Pfam Armadillo/beta-catenin-like repeat 237 273 IPR000225 GO:0005515
Gma15g01350 521 PANTHER IMPORTIN SUBUNIT ALPHA 2 464 - -
Gma15g01350 521 SUPERFAMILY ARM repeat 6 465 IPR016024 -
Gma15g01350 521 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Gma15g01350 521 MobiDBLite consensus disorder prediction 37 59 - -
Gma15g01350 521 SMART arm_5 149 189 IPR000225 GO:0005515
Gma15g01350 521 SMART arm_5 404 444 IPR000225 GO:0005515
Gma15g01350 521 SMART arm_5 318 359 IPR000225 GO:0005515
Gma15g01350 521 SMART arm_5 235 274 IPR000225 GO:0005515
Gma15g01350 521 SMART arm_5 361 401 IPR000225 GO:0005515
Gma15g01350 521 SMART arm_5 276 316 IPR000225 GO:0005515
Gma15g01350 521 SMART arm_5 190 232 IPR000225 GO:0005515
Gma15g01350 521 SMART arm_5 106 147 IPR000225 GO:0005515
Gma15g01350 521 Gene3D - 11 50 IPR036975 GO:0006606
Gma15g01350 521 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Gma15g01350 521 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Gma15g01350 521 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 372 400 IPR000225 GO:0005515
Gma15g01350 521 PIRSF Importin_alpha 2 467 IPR024931 GO:0005737|GO:0006606|GO:0061608
Gma15g01350 521 Pfam Importin beta binding domain 12 96 IPR002652 GO:0006606|GO:0061608
Gma15g01350 521 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 329 372 IPR000225 GO:0005515
Gma15g01350 521 Gene3D - 74 480 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01350 Gma-Chr15 12053015 12056785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01350 252 466 U-box Gene Family AT3G46510 25.346 9.83e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01350 K15042 - gmx:100808498 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01350 15 12053015 12056785 Gma15g01350 15 12053015 12056785 ECH
Gma15g01350 15 12053015 12056785 Gma19g02179 19 50627414 50633346 ECH
Gma15g01350 15 12053015 12056785 Gma03g02147 03 46928886 46934168 ECH
Gma15g01350 15 12053015 12056785 Gma10g01472 10 41818670 41824474 ECH
Gma15g01350 15 12053015 12056785 Gma20g02228 20 49397462 49401869 ECH
Gma15g01350 15 12053015 12056785 Gma09g00356 09 3354140 3359146 GST
Gma17g00286 17 2316821 2322843 Gma15g01350 15 12053015 12056785 PCT
Gma15g01350 15 12053015 12056785 Gma17g00286 17 2316821 2322843 PCT