Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01339 ATGGCACCGTTTTTCTTGGCTTTGCCGATTTGTACTTTCCGACTTACCGTTTCTCTTTCTTCCAATCTCCGGAATCAGGTTGTCGGTGCTGCAATTGTTAGTTTTGTGCTAAGAGAAGAAGCTGTTGGGAAAGTTTCTTTTGTTGTGATGATGTCACACAACTTAACGGGGCAGCTTGTGAGTGCAGAGATACATGGCTTTCACACGTTGGAGGATTTGGATGTTAGTAATACTATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCCAATGAGATCCATGCCATACTCTGTAATCACAAATATTTCAAGATCAATGTCAAGCCAGTGAATTTGCCCAAAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTAGGAACTTCAGAAAAGATGGGCACAATTGGAAAAAGAAAACCGATGGGAAAACTGTCAAAGAAGCCCATGAACACTTAAAAGTTGGCAATGAAGAAAGGATCCACGTATATTATGCACATGGCCAAGATAACCCAACCTTTGTTCGTAGATGTTATTGGTTGCTTGATAAGAATCTGGAGCACATAGTCCTTGTTCATTATCGTGACACACAAGAGTTACAATTGCAAGGTTCTCCTGCTACACCCGTAAATTCAAATTCAAGTTCTGCCTCTGATCCAGCTGCATCTTGGATTCCATCAGAAGACTTGGATTCTGGGGTGAACAGTGCTTATGCTGTTGAGCTTAATGACAATTTAACTGCCAAAAGTCATGAGCAGAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTCCAAATGTCAACACTTCTACTACATCTAATGGAGGCAACGTCCCATATTCATTTCAAGAAAATCAAAGTTTACTGAGTGGAAGATTTGGCAATGTATCCAGTAATCCTTCAGCAGAAATTCCTTCTTTTGGTAATTTAACTCAGCCAGTTTCTGGGAGCAATAGTGCCCCTTACAGTTTCCCAGATAGTGCTATTCTTCTGAAAAATAGTCCTATATCATCGGGAGGCGTTGACACCTTGGGCACTTTGGTCAACGAAGGCTTGCAAAGTCAGGACAGCTTTGGAACGTGGATGAACATCATATCGGATACACCATGTTCCATAGATGAATCAGCTCTTAAAGCATCAATTTCTTCTGTTCATGTACCATATTCATCACTGGTGGCAGATAATCTGCAATCTTCTCTGCCAGAACAAGTATTTAATCTCACTGAGGTGTCCCCTACATGGGCATCTTCCACTGAGAAAACAAAGGTCCTGGTAACTGGATATTTTCATAATAACTATGAAAACCTTGCAAAGTCCAACCTACTGTGTGTCTGTGGTGATGTAAGTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGGTGCTGCGTACCACCACACTCGCCTGGATTGGTCAATCTCTATTTGAGCTTTGATGGCCATAAGCCCATCAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTATTTTGCATGAGCCAACTGCTTCAATGGAAGAGAAATACAACTGGAATGAGTTTCGACTTCAGATGAGGCTTGCTCATTTGCTCTTTGCTTCAGACACGAGCCTTAACATTTTCTCAAGTAAAGTATCACCGAATGCACTGAAAGAGGCTAGAAGATTTTCCTTCAAAACATCATATATCTCCAAAAGTTGGCAATACTTGATGAAGTCAATTGATGACAATACAATTCCATTTTCAAAAGTAAAAGATTCCTTGTTTGAAACTGCATTGAAAAACAAATTAAAGGAATGGCTTTTGGAACGAATTATCTTAGGCAGAAAGAGTACTGAATATGATGCGCAAGGGCAAGGTGTAATTCATTTGTGTGCAATGCTAGGATATAGTTGGGCAATCTCCTTATTTTCTTGGTCGGGCTTGTCGCTGGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCATCTTATGGAATGGAGAAAATGGTTGCAACTCTGTTGTCTTGTGGGGCAAGGCCAAACTTGGTCACAGATCCAACTCCACAATATCCTGGTGGATGTACTGCTGCTGATCTTGCCTATATGAAGGGATGTGATGGCTTAGCTGCTTTCCTTTCTGAGAAGTCTCTGGTTGAGCAGTTCAATGAAATGAGTTTGGCTGGAAATATCAGTGGCTCACTGGAAACTAGCTCAACTGATCCAGTAAATGCTGAGAACCTTACTGAGGACCAACTGTACGTTAAGGAGACTTTGGCAGCTTACCGTATATCTGCCGAGGCTGCAGCACGGATTCAAGCTGCATTTAGGGAGCATTCATTTAAATTACGATATAAGGCAGTTGAAATTATCAGCCCAGAGGAAGAAGCACGTCAAATAGTAGCAGCAATGAGGATTCAACATGCCTTTCGCAACTATGAGTCAAAAAAAAAGATGACAGCCGCCGCTCGGATTCAGCATAGATTTCGTACATGGAAGTACCGTAGAGAATTTCTCAACATGCGGCATCAAGCTATCAAAATTCAAGCTGCTTTCAGGGGCTTTCAAGCACGGAAGCAATATCGGAAAATCATATGGTCTGTTGGGGTGCTTGAGAAAGTGATCCTGCGTTGGCGTTTAAAGAGAAAAGGCTTTCGTGGTCTCCAGGTTAATCCTGCCAGGGAGGAGACGCAGGAAAGTGATTCAATTGCAGAGGAGGATTTCTTTCGCACCGGCCGGAAACAAGCTGAAGAACGCATTGAGAGGTCTGTCATACGTGTGCAGGCCATGTTCCGTTCTAAGAAAGCACAAGAAGAATATAGAAGGATGAAGCTGACACATAATCAAGCAAAGCTGGAACTGGAATTAGAAGAATTCCTTGATTCTGAAGTTGACATGTTACCCAAGACATAG 2883 0.4211 MAPFFLALPICTFRLTVSLSSNLRNQVVGAAIVSFVLREEAVGKVSFVVMMSHNLTGQLVSAEIHGFHTLEDLDVSNTMEEAKSRWLRPNEIHAILCNHKYFKINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKTDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPTFVRRCYWLLDKNLEHIVLVHYRDTQELQLQGSPATPVNSNSSSASDPAASWIPSEDLDSGVNSAYAVELNDNLTAKSHEQRLHEINTLEWDDLVVPNVNTSTTSNGGNVPYSFQENQSLLSGRFGNVSSNPSAEIPSFGNLTQPVSGSNSAPYSFPDSAILLKNSPISSGGVDTLGTLVNEGLQSQDSFGTWMNIISDTPCSIDESALKASISSVHVPYSSLVADNLQSSLPEQVFNLTEVSPTWASSTEKTKVLVTGYFHNNYENLAKSNLLCVCGDVSVPVEIVQVGVYRCCVPPHSPGLVNLYLSFDGHKPISQVVNFEYRTPILHEPTASMEEKYNWNEFRLQMRLAHLLFASDTSLNIFSSKVSPNALKEARRFSFKTSYISKSWQYLMKSIDDNTIPFSKVKDSLFETALKNKLKEWLLERIILGRKSTEYDAQGQGVIHLCAMLGYSWAISLFSWSGLSLDFRDKFGWTALHWAASYGMEKMVATLLSCGARPNLVTDPTPQYPGGCTAADLAYMKGCDGLAAFLSEKSLVEQFNEMSLAGNISGSLETSSTDPVNAENLTEDQLYVKETLAAYRISAEAAARIQAAFREHSFKLRYKAVEIISPEEEARQIVAAMRIQHAFRNYESKKKMTAAARIQHRFRTWKYRREFLNMRHQAIKIQAAFRGFQARKQYRKIIWSVGVLEKVILRWRLKRKGFRGLQVNPAREETQESDSIAEEDFFRTGRKQAEERIERSVIRVQAMFRSKKAQEEYRRMKLTHNQAKLELELEEFLDSEVDMLPKT 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01339 960 ProSiteProfiles Ankyrin repeat region circular profile. 644 672 - -
Gma15g01339 960 ProSiteProfiles IQ motif profile. 910 939 IPR000048 GO:0005515
Gma15g01339 960 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 64 957 - -
Gma15g01339 960 Coils Coil 923 943 - -
Gma15g01339 960 MobiDBLite consensus disorder prediction 201 221 - -
Gma15g01339 960 SUPERFAMILY Ankyrin repeat 592 705 IPR036770 -
Gma15g01339 960 SMART iq_5 754 776 IPR000048 GO:0005515
Gma15g01339 960 SMART iq_5 807 829 IPR000048 GO:0005515
Gma15g01339 960 SMART iq_5 830 852 IPR000048 GO:0005515
Gma15g01339 960 SMART iq_5 909 931 IPR000048 GO:0005515
Gma15g01339 960 Pfam CG-1 domain 81 194 IPR005559 GO:0003677
Gma15g01339 960 Pfam IQ calmodulin-binding motif 835 852 IPR000048 GO:0005515
Gma15g01339 960 Gene3D - 572 712 IPR036770 -
Gma15g01339 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 757 858 IPR027417 -
Gma15g01339 960 SMART ANK_2a 644 673 IPR002110 GO:0005515
Gma15g01339 960 ProSiteProfiles IQ motif profile. 831 855 IPR000048 GO:0005515
Gma15g01339 960 ProSiteProfiles CG-1 DNA-binding domain profile. 75 201 IPR005559 GO:0003677
Gma15g01339 960 ProSiteProfiles IQ motif profile. 789 818 IPR000048 GO:0005515
Gma15g01339 960 ProSiteProfiles Ankyrin repeat profile. 644 676 IPR002110 GO:0005515
Gma15g01339 960 SMART CG_1_2 79 196 IPR005559 GO:0003677
Gma15g01339 960 Gene3D Immunoglobulins 403 498 IPR013783 -
Gma15g01339 960 Pfam Ankyrin repeats (3 copies) 590 673 IPR002110 GO:0005515
Gma15g01339 960 ProSiteProfiles IQ motif profile. 808 837 IPR000048 GO:0005515
Gma15g01339 960 Pfam IPT/TIG domain 409 494 IPR002909 -
Gma15g01339 960 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 64 957 - -
Gma15g01339 960 ProSiteProfiles IQ motif profile. 755 784 IPR000048 GO:0005515
Gma15g01339 960 MobiDBLite consensus disorder prediction 201 220 - -
Gma15g01339 960 Gene3D - 807 855 - -
Gma15g01339 960 SUPERFAMILY E set domains 408 495 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01339 Gma-Chr15 11902904 11913123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01339 79 943 CAMTA Transcription Factor Family AT3G16940 55.696 0.0 952
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gma15g01339 CG-1 9.9e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01339 K21596 - gmx:100819198 1790.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01339 15 11902904 11913123 Gma15g01339 15 11902904 11913123 ECH
Gma15g01339 15 11902904 11913123 Gma09g00345 09 3238890 3249640 GST
Gma17g00294 17 2379404 2386529 Gma15g01339 15 11902904 11913123 PCT
Gma15g01339 15 11902904 11913123 Gma17g00294 17 2379404 2386529 PCT